Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AVT_RS09230 Genome accession   NZ_CP115303
Coordinates   1765999..1767825 (-) Length   608 a.a.
NCBI ID   WP_270185385.1    Uniprot ID   -
Organism   Bacillus tropicus strain JMT105-2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1760999..1772825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT_RS09195 (AVT_09195) - 1761426..1762223 (-) 798 WP_000673184.1 NAD kinase -
  AVT_RS09200 (AVT_09200) - 1762242..1762880 (-) 639 WP_001081480.1 GTP pyrophosphokinase -
  AVT_RS09205 (AVT_09205) - 1762911..1763282 (-) 372 WP_001180001.1 hypothetical protein -
  AVT_RS09210 (AVT_09210) - 1763427..1764005 (+) 579 WP_087965495.1 CYTH domain-containing protein -
  AVT_RS09215 (AVT_09215) - 1764186..1764584 (+) 399 WP_087951668.1 globin -
  AVT_RS09220 (AVT_09220) - 1764584..1765477 (+) 894 WP_087951667.1 ClpXP adapter SpxH family protein -
  AVT_RS09225 (AVT_09225) - 1765707..1765880 (+) 174 WP_002051510.1 hypothetical protein -
  AVT_RS09230 (AVT_09230) pepF 1765999..1767825 (-) 1827 WP_270185385.1 oligoendopeptidase F Regulator
  AVT_RS09235 (AVT_09235) - 1767876..1769120 (-) 1245 WP_270185386.1 competence protein CoiA -
  AVT_RS09240 (AVT_09240) - 1769201..1770745 (-) 1545 WP_000799204.1 cardiolipin synthase -
  AVT_RS09245 (AVT_09245) mecA 1770818..1771501 (-) 684 WP_000350711.1 adaptor protein MecA Regulator
  AVT_RS09250 (AVT_09250) - 1771829..1772503 (+) 675 WP_000362615.1 TerC family protein -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70335.63 Da        Isoelectric Point: 4.6458

>NTDB_id=771719 AVT_RS09230 WP_270185385.1 1765999..1767825(-) (pepF) [Bacillus tropicus strain JMT105-2]
MSEQNTAKTLPDRNEIEESNTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDMLLKSLHVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHMIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=771719 AVT_RS09230 WP_270185385.1 1765999..1767825(-) (pepF) [Bacillus tropicus strain JMT105-2]
ATGTCTGAACAAAACACAGCAAAAACATTACCAGATCGTAACGAGATTGAAGAATCAAATACTTGGCGATTAGAAGATAT
TTTTCAAACAGATGCAGAATGGGAAAAAGAATTCCAAGCTATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGAACAATTTACTTGAAGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCATTAAATGACCGCGCGACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCATATATTGTGCCTGAAATTTTATCGATATCAGAAGATACGCTACAAACATTTTTAA
AAGAAAATAGAGACTTAAGTGTATATGAACATGCATTAGAAGAAATTACGCGCCAACGTCCGCACGTATTATCTGAAGCG
GAAGAGGCTTTATTAGCAGAAGCATCTGAAGTAATGAGTGCGTCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAAGTAGAAATCACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTGCGTGAAGATGCATTCAAAGCTGTATATGAAACGTACGGAAAATATAAGAACACATTTGCAAGTACG
TTAAGCGGAGCTGTGAAGCGTAATAATTTCAATGCGCGCGTTCGCAAATACGATTCTGCACGTCAAGCTGCATTAAGTAA
TAATAATATTCCTGAAGCGGTGTACGATCAACTTGTTGAATCTGTAAATGATAATTTACACTTGCTACATCGTTACATTG
ATATTCGTAAGCGTGCACTAGGGCTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AACGTGAAGTATGAAGAAGCGCAAGACATGTTATTAAAGTCTTTACATGTACTTGGGGATGAGTATGTTGATATTTTGAA
AGAAGCATATGAAAATCGCTGGGTAGATGTATATGAGAACAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCATATG
GAACAAATCCTTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAATTTGGTCATTCT
GTGCATAGTTACTACACAAGAAAAACGCAGCCGCACGTATACGGTGACTATTCAATCTTTGTCGCGGAAGTAGCATCAAC
TTGTAATGAAGCGTTGCTAAACGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATACTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTCGCAGAGTTTGAGCATATGATTCATAAGAAAGTACAA
GAGGGACATGCGGTTACGCCAGACATGTTAACGGAGATCTACTATGATTTAAATAAGAAATATTTCGGTGATGCTTTAGT
AATTGATGAAGAAATTGGTTTAGAGTGGTCTCGTATTCCGCACTTCTACTACAACTATTACGTATACCAATACGCAACAG
GATTTAGTGCAGCAACGGCTCTATCTAAACAAATTTTAGAAGAAGGACAACCAGCCGTAGAACGTTACATTAATGAGTTC
TTAAAAGCAGGAAGCTCGGATTACCCAATTGAAGTGCTGAAAAAAGCTGGAGTAGATATGGCATCTCCAGAACCGGTAAA
AGAAGCATTGCAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCTTTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.253

97.533

0.49