Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QQ972_RS21925 Genome accession   NZ_CP127255
Coordinates   4523862..4524599 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain Q5     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4518862..4529599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ972_RS21910 (QQ972_21910) clpC 4519316..4521889 (-) 2574 WP_001314061.1 ATP-dependent chaperone ClpB Regulator
  QQ972_RS21915 (QQ972_21915) yfiH 4522019..4522750 (-) 732 WP_000040120.1 purine nucleoside phosphorylase YfiH -
  QQ972_RS21920 (QQ972_21920) rluD 4522747..4523727 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QQ972_RS21925 (QQ972_21925) comL 4523862..4524599 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QQ972_RS21930 (QQ972_21930) - 4524649..4525977 (-) 1329 WP_097752289.1 IS4-like element IS4 family transposase -
  QQ972_RS21935 (QQ972_21935) raiA 4526308..4526649 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QQ972_RS21940 (QQ972_21940) pheL 4526753..4526800 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  QQ972_RS21945 (QQ972_21945) pheA 4526899..4528059 (+) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  QQ972_RS21950 (QQ972_21950) tyrA 4528102..4529223 (-) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=771700 QQ972_RS21925 WP_000197686.1 4523862..4524599(+) (comL) [Escherichia coli strain Q5]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=771700 QQ972_RS21925 WP_000197686.1 4523862..4524599(+) (comL) [Escherichia coli strain Q5]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376