Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP76_RS01545 Genome accession   NZ_CP115297
Coordinates   313508..314065 (-) Length   185 a.a.
NCBI ID   WP_003125211.1    Uniprot ID   A0A6A9K9C7
Organism   Pseudomonas aeruginosa strain 135     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 308508..319065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP76_RS01530 (PCP76_01530) pilY1 308606..312091 (-) 3486 WP_073649715.1 type 4a pilus biogenesis protein PilY1 -
  PCP76_RS01535 (PCP76_01535) pilX 312103..312690 (-) 588 WP_033972921.1 type 4a pilus minor pilin PilX -
  PCP76_RS01540 (PCP76_01540) pilW 312687..313511 (-) 825 WP_073649714.1 type 4a pilus minor pilin PilW -
  PCP76_RS01545 (PCP76_01545) pilV 313508..314065 (-) 558 WP_003125211.1 type 4a pilus minor pilin PilV Machinery gene
  PCP76_RS01550 (PCP76_01550) - 314056..314562 (-) 507 WP_003134935.1 GspH/FimT family pseudopilin -
  PCP76_RS01555 (PCP76_01555) - 314668..315177 (-) 510 WP_073649713.1 GspH/FimT family pseudopilin -
  PCP76_RS01560 (PCP76_01560) thiO 315312..316406 (+) 1095 WP_039028141.1 glycine oxidase ThiO -
  PCP76_RS01565 (PCP76_01565) pilR 316452..317789 (-) 1338 WP_073649712.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20087.19 Da        Isoelectric Point: 8.2171

>NTDB_id=771600 PCP76_RS01545 WP_003125211.1 313508..314065(-) (pilV) [Pseudomonas aeruginosa strain 135]
MLLKSRHRSLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=771600 PCP76_RS01545 WP_003125211.1 313508..314065(-) (pilV) [Pseudomonas aeruginosa strain 135]
ATGCTATTGAAATCGCGACACAGGTCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGTACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGATACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A9K9C7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.919

100

0.989