Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   QQ984_RS20860 Genome accession   NZ_CP127223
Coordinates   4002172..4002861 (+) Length   229 a.a.
NCBI ID   WP_003186410.1    Uniprot ID   -
Organism   Bacillus licheniformis strain Jrh14-10     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3997172..4007861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ984_RS20840 (QQ984_20840) aspA 3997848..3999275 (-) 1428 WP_003186403.1 aspartate ammonia-lyase -
  QQ984_RS20845 (QQ984_20845) - 3999296..4000285 (-) 990 WP_003186405.1 asparaginase -
  QQ984_RS20850 (QQ984_20850) - 4000501..4000848 (+) 348 WP_003186406.1 helix-turn-helix transcriptional regulator -
  QQ984_RS20855 (QQ984_20855) - 4000929..4001975 (-) 1047 WP_003186408.1 lactonase family protein -
  QQ984_RS20860 (QQ984_20860) braR 4002172..4002861 (+) 690 WP_003186410.1 response regulator transcription factor Regulator
  QQ984_RS20865 (QQ984_20865) - 4002858..4003838 (+) 981 WP_003186412.1 ATP-binding protein -
  QQ984_RS20870 (QQ984_20870) - 4004121..4004897 (+) 777 WP_003186414.1 ABC transporter ATP-binding protein -
  QQ984_RS20875 (QQ984_20875) - 4004872..4006749 (+) 1878 WP_003186416.1 ABC transporter permease -
  QQ984_RS20880 (QQ984_20880) - 4006756..4007106 (+) 351 WP_017474095.1 YxeA family protein -
  QQ984_RS20885 (QQ984_20885) - 4007222..4007392 (+) 171 WP_017474096.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26825.77 Da        Isoelectric Point: 5.1276

>NTDB_id=771536 QQ984_RS20860 WP_003186410.1 4002172..4002861(+) (braR) [Bacillus licheniformis strain Jrh14-10]
MTKIMIVEDSEDIRKLLRDHLEKYGYETVAATDFTSILEIFLQEKPDLALLDINLPAYDGYYWCRQIRQHSTCPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYEVVLAKIKGQIRRAFGEYAVKQGEKVIEFEGVQLFVERFELHCRNEKLELSKKES
KLLEVLLERGEKVTSRDRLMEKTWETDTFVDENTLNVYITRIRKKLRSMDVPFSIESVRGEGYQLRTKS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=771536 QQ984_RS20860 WP_003186410.1 4002172..4002861(+) (braR) [Bacillus licheniformis strain Jrh14-10]
ATGACGAAAATCATGATTGTCGAGGACAGCGAAGACATTCGGAAGCTTTTACGCGATCATTTAGAAAAATACGGATACGA
AACTGTTGCAGCGACTGATTTCACCTCTATCCTTGAAATATTTCTCCAAGAGAAGCCCGACCTGGCATTGCTTGACATCA
ATCTGCCGGCATACGACGGTTACTACTGGTGCAGGCAAATCCGCCAGCATTCGACTTGTCCGATCATTTTCATTTCGGCG
AGAAGCGGAGAAATGGATCAGGTCATGGCGATCGAAAACGGCGGCGATGATTATATAGAGAAGCCTTTTTCCTATGAGGT
GGTGCTCGCTAAAATTAAAGGCCAAATTCGCAGGGCATTTGGAGAATACGCAGTAAAACAAGGTGAAAAAGTGATTGAAT
TTGAAGGCGTCCAGCTGTTTGTCGAACGTTTTGAGCTGCACTGCCGAAATGAGAAGCTCGAGCTTTCAAAAAAGGAAAGC
AAGCTCTTGGAAGTGCTGCTTGAAAGAGGAGAAAAGGTGACAAGCAGAGACCGGTTAATGGAGAAGACATGGGAAACCGA
TACATTTGTAGATGAAAACACGCTAAATGTCTATATTACAAGGATTCGCAAAAAACTGCGAAGCATGGACGTGCCCTTCT
CAATTGAATCTGTGCGGGGCGAAGGGTATCAGCTGAGGACGAAATCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.807

97.38

0.397
  vicR Streptococcus mutans UA159

35.319

100

0.362