Detailed information NTG0771478

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PCP28_RS22665
• Genome accession: NZ_CP115293
• Coordinates: 4422770..4423642 (+)
• Length: 290 a.a.
• NCBI ID: WP_003107301.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain 382
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4417770..4428642

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP28_RS22650 (PCP28_22630)	-	4419153..4419617 (-)	465	WP_021205141.1	pilin	-
PCP28_RS22655 (PCP28_22635)	pilB	4419848..4421548 (+)	1701	WP_021205142.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PCP28_RS22660 (PCP28_22640)	pilC	4421552..4422769 (+)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
PCP28_RS22665 (PCP28_22645)	pilD	4422770..4423642 (+)	873	WP_003107301.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PCP28_RS22670 (PCP28_22650)	coaE	4423639..4424250 (+)	612	WP_023114838.1	dephospho-CoA kinase	-
PCP28_RS22675 (PCP28_22655)	yacG	4424247..4424447 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PCP28_RS22680 (PCP28_22660)	-	4424484..4424693 (-)	210	WP_003094660.1	hypothetical protein	-
PCP28_RS22685 (PCP28_22665)	-	4424799..4425488 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
PCP28_RS22690 (PCP28_22670)	-	4425485..4425955 (-)	471	WP_019486073.1	hypothetical protein	-
PCP28_RS22695 (PCP28_22675)	-	4425952..4426377 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
PCP28_RS22700 (PCP28_22680)	-	4426510..4427139 (+)	630	WP_003120948.1	DUF1780 domain-containing protein	-
PCP28_RS22705 (PCP28_22685)	-	4427136..4427585 (+)	450	WP_003161439.1	MOSC domain-containing protein	-
PCP28_RS22710 (PCP28_22690)	-	4427611..4427781 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31873.90 Da
• Isoelectric Point: 7.7068

>NTDB_id=771478 PCP28_RS22665 WP_003107301.1 4422770..4423642(+) (pilD) [Pseudomonas aeruginosa strain 382]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=771478 PCP28_RS22665 WP_003107301.1 4422770..4423642(+) (pilD) [Pseudomonas aeruginosa strain 382]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAATGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469