Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QQ984_RS10460 Genome accession   NZ_CP127223
Coordinates   2011913..2012341 (+) Length   142 a.a.
NCBI ID   WP_003182220.1    Uniprot ID   Q65J43
Organism   Bacillus licheniformis strain Jrh14-10     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2006913..2017341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ984_RS10430 (QQ984_10430) - 2007096..2007704 (+) 609 WP_009328237.1 flavin reductase family protein -
  QQ984_RS10435 (QQ984_10435) wrbA 2007905..2008516 (+) 612 WP_003182210.1 NAD(P)H:quinone oxidoreductase -
  QQ984_RS10440 (QQ984_10440) - 2008837..2008977 (+) 141 WP_003182211.1 hypothetical protein -
  QQ984_RS10445 (QQ984_10445) - 2008970..2009803 (+) 834 WP_003182213.1 prohibitin family protein -
  QQ984_RS10450 (QQ984_10450) - 2009894..2010655 (+) 762 WP_003182215.1 hypothetical protein -
  QQ984_RS10455 (QQ984_10455) - 2010715..2011554 (+) 840 WP_003182218.1 thymidylate synthase -
  QQ984_RS10460 (QQ984_10460) nucA/comI 2011913..2012341 (+) 429 WP_003182220.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QQ984_RS10465 (QQ984_10465) dinR/lexA 2012537..2013160 (-) 624 WP_003182222.1 transcriptional repressor LexA Regulator
  QQ984_RS10470 (QQ984_10470) yneA 2013313..2013624 (+) 312 WP_003182225.1 cell division suppressor protein YneA -
  QQ984_RS10475 (QQ984_10475) - 2013643..2014290 (+) 648 WP_003182227.1 recombinase family protein -
  QQ984_RS10480 (QQ984_10480) - 2014356..2014589 (+) 234 WP_003182231.1 DUF896 domain-containing protein -
  QQ984_RS10485 (QQ984_10485) recP/tkt 2014756..2016759 (+) 2004 WP_095240068.1 transketolase Machinery gene

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15332.29 Da        Isoelectric Point: 7.8987

>NTDB_id=771472 QQ984_RS10460 WP_003182220.1 2011913..2012341(+) (nucA/comI) [Bacillus licheniformis strain Jrh14-10]
MIKKWAVHLLFSALVLLGLSGGAAYSPQHAEGAARYDDILYFPASRYPETGAHISDAIKAGHSDVCTIERSGADKRRQES
LKGIPTKPGFDRDEWPMAMCEEGGKGASVRYVSSSDNRGAGSWVGNRLSGFADGTRILFIVQ

Nucleotide


Download         Length: 429 bp        

>NTDB_id=771472 QQ984_RS10460 WP_003182220.1 2011913..2012341(+) (nucA/comI) [Bacillus licheniformis strain Jrh14-10]
ATGATCAAAAAATGGGCGGTTCATCTGCTGTTTTCCGCATTGGTACTGCTTGGGCTTTCGGGAGGCGCCGCATATTCTCC
TCAGCATGCCGAAGGTGCTGCAAGGTATGACGACATATTGTATTTTCCGGCATCCCGCTATCCCGAAACCGGCGCTCATA
TCAGCGACGCAATCAAAGCGGGGCATTCAGATGTCTGCACGATTGAAAGATCGGGAGCGGATAAGCGCCGCCAGGAATCA
CTGAAGGGGATTCCGACTAAGCCGGGCTTTGACCGTGACGAATGGCCGATGGCCATGTGTGAAGAAGGGGGCAAAGGAGC
GTCTGTCAGATATGTCAGCTCATCGGATAACCGCGGAGCCGGCTCCTGGGTCGGGAACAGGCTGAGCGGTTTCGCCGACG
GGACGAGAATTTTGTTTATCGTTCAATAA

Domains

Predicted by InterProScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 6EJS
  PDB 6EJT
  PDB 6EJU
  PDB 6EJV
  PDB 9FJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.73

88.732

0.521