Detailed information NTG0771400

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PCP67_RS07950
• Genome accession: NZ_CP115289
• Coordinates: 1677176..1678048 (+)
• Length: 290 a.a.
• NCBI ID: WP_023084740.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain F004
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1672176..1683048

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP67_RS07935 (PCP67_07925)	-	1673559..1674023 (-)	465	WP_003111216.1	pilin	-
PCP67_RS07940 (PCP67_07930)	pilB	1674254..1675954 (+)	1701	WP_034083986.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PCP67_RS07945 (PCP67_07935)	pilC	1675958..1677175 (+)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
PCP67_RS07950 (PCP67_07940)	pilD	1677176..1678048 (+)	873	WP_023084740.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PCP67_RS07955 (PCP67_07945)	coaE	1678045..1678656 (+)	612	WP_074222680.1	dephospho-CoA kinase	-
PCP67_RS07960 (PCP67_07950)	yacG	1678653..1678853 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PCP67_RS07965 (PCP67_07955)	-	1678890..1679099 (-)	210	WP_058355292.1	hypothetical protein	-
PCP67_RS07970 (PCP67_07960)	-	1679205..1679894 (-)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
PCP67_RS07975 (PCP67_07965)	-	1679891..1680361 (-)	471	WP_003094664.1	hypothetical protein	-
PCP67_RS07980 (PCP67_07970)	-	1680358..1680783 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
PCP67_RS07985 (PCP67_07975)	-	1680916..1681545 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
PCP67_RS07990 (PCP67_07980)	-	1681542..1681991 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
PCP67_RS07995 (PCP67_07985)	-	1682017..1682187 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31843.88 Da
• Isoelectric Point: 7.7068

>NTDB_id=771400 PCP67_RS07950 WP_023084740.1 1677176..1678048(+) (pilD) [Pseudomonas aeruginosa strain F004]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=771400 PCP67_RS07950 WP_023084740.1 1677176..1678048(+) (pilD) [Pseudomonas aeruginosa strain F004]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTATGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472