Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PCP81_RS27945 | Genome accession | NZ_CP115288 |
| Coordinates | 6004403..6005275 (-) | Length | 290 a.a. |
| NCBI ID | WP_034034083.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain F005 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5999403..6010275
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PCP81_RS27900 (PCP81_27905) | - | 6000264..6000434 (-) | 171 | WP_003094672.1 | DUF3094 family protein | - |
| PCP81_RS27905 (PCP81_27910) | - | 6000460..6000909 (-) | 450 | WP_003161439.1 | MOSC domain-containing protein | - |
| PCP81_RS27910 (PCP81_27915) | - | 6000906..6001535 (-) | 630 | WP_015648058.1 | DUF1780 domain-containing protein | - |
| PCP81_RS27915 (PCP81_27920) | - | 6001668..6002093 (+) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| PCP81_RS27920 (PCP81_27925) | - | 6002090..6002560 (+) | 471 | WP_003103866.1 | hypothetical protein | - |
| PCP81_RS27925 (PCP81_27930) | - | 6002557..6003246 (+) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| PCP81_RS27930 (PCP81_27935) | - | 6003352..6003561 (+) | 210 | WP_003094660.1 | hypothetical protein | - |
| PCP81_RS27935 (PCP81_27940) | yacG | 6003598..6003798 (-) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| PCP81_RS27940 (PCP81_27945) | coaE | 6003795..6004406 (-) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| PCP81_RS27945 (PCP81_27950) | pilD | 6004403..6005275 (-) | 873 | WP_034034083.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| PCP81_RS27950 (PCP81_27955) | pilC | 6005278..6006495 (-) | 1218 | WP_003116250.1 | type II secretion system F family protein | Machinery gene |
| PCP81_RS27955 (PCP81_27960) | pilB | 6006499..6008202 (-) | 1704 | WP_003116249.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PCP81_RS27960 (PCP81_27965) | - | 6008431..6008970 (+) | 540 | WP_003116248.1 | pilin | - |
| PCP81_RS27965 (PCP81_27970) | - | 6009034..6009732 (+) | 699 | WP_023121720.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31931.94 Da Isoelectric Point: 7.3454
>NTDB_id=771391 PCP81_RS27945 WP_034034083.1 6004403..6005275(-) (pilD) [Pseudomonas aeruginosa strain F005]
MELLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGTVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MELLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGTVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=771391 PCP81_RS27945 WP_034034083.1 6004403..6005275(-) (pilD) [Pseudomonas aeruginosa strain F005]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCACGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCACGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
54.325 |
99.655 |
0.541 |
| pilD | Vibrio campbellii strain DS40M4 |
52.797 |
98.621 |
0.521 |
| pilD | Acinetobacter nosocomialis M2 |
50.352 |
97.931 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.352 |
97.931 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.561 |
95.862 |
0.466 |