Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QOM21_RS17130 Genome accession   NZ_CP127172
Coordinates   3906596..3907195 (-) Length   199 a.a.
NCBI ID   WP_006604196.1    Uniprot ID   J2K272
Organism   Streptomyces sp. Pv4-95 voucher LV 740     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3901596..3912195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOM21_RS17110 (QOM21_17115) - 3901996..3902658 (-) 663 WP_407551076.1 SigE family RNA polymerase sigma factor -
  QOM21_RS17115 (QOM21_17120) - 3903031..3904146 (-) 1116 WP_407551077.1 aspartate-semialdehyde dehydrogenase -
  QOM21_RS17120 (QOM21_17125) - 3904143..3905414 (-) 1272 WP_393893260.1 aspartate kinase -
  QOM21_RS17125 (QOM21_17130) - 3905944..3906603 (-) 660 WP_393892868.1 DUF5063 domain-containing protein -
  QOM21_RS17130 (QOM21_17135) recR 3906596..3907195 (-) 600 WP_006604196.1 recombination mediator RecR Machinery gene
  QOM21_RS17135 (QOM21_17140) - 3907247..3907606 (-) 360 WP_398560500.1 YbaB/EbfC family nucleoid-associated protein -
  QOM21_RS17140 (QOM21_17145) - 3907925..3910573 (-) 2649 WP_407551081.1 DNA polymerase III subunit gamma and tau -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21818.19 Da        Isoelectric Point: 4.9909

>NTDB_id=771375 QOM21_RS17130 WP_006604196.1 3906596..3907195(-) (recR) [Streptomyces sp. Pv4-95 voucher LV 740]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLANALMEVKAKVRFCSVCGNVAQEEQCRVCLDPRRDPAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=771375 QOM21_RS17130 WP_006604196.1 3906596..3907195(-) (recR) [Streptomyces sp. Pv4-95 voucher LV 740]
GTGTATGAAGGCGTGGTTCAGGATCTGATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTTCACATTCTTCAGGCCGAGCCGACCGATGTCCGCCGGCTTGCCAACGCGTTGATGGAGGTCAAGGCGAAGGTCC
GGTTCTGCAGCGTGTGCGGCAATGTCGCGCAGGAGGAGCAGTGCCGGGTCTGCCTGGACCCGCGACGCGATCCGGCGGTC
ATCTGTGTGGTGGAAGAGCCCAAGGACGTCGTGGCGATCGAGCGGACGCGTGAGTTCCGCGGTCGCTACCACGTGCTGGG
TGGGGCGATCAGCCCGATCGAGGGCGTCGGCCCCGACGACCTGCGGATCAGGGAACTGCTGGCCAGGCTGGCGGACGGCA
CCGTCACCGAGCTGATCCTGGCCACCGACCCGAATCTGGAGGGCGAGGCCACGGCCACCTATCTGGCCCGCATGATCAAA
CCCATGGGGCTGAGAGTGACGCGACTGGCCAGCGGACTGCCGGTCGGAGGCGACCTGGAGTATGCGGACGAGGTCACGCT
CGGGCGGGCCTTCGAAGGGAGGAGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2K272

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452