Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QOM21_RS16045 Genome accession   NZ_CP127172
Coordinates   3657322..3658734 (+) Length   470 a.a.
NCBI ID   WP_398558202.1    Uniprot ID   -
Organism   Streptomyces sp. Pv4-95 voucher LV 740     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3652322..3663734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOM21_RS16030 (QOM21_16035) - 3653211..3654143 (-) 933 WP_407550758.1 Ppx/GppA family phosphatase -
  QOM21_RS16035 (QOM21_16040) - 3654263..3655114 (+) 852 WP_407550759.1 hypothetical protein -
  QOM21_RS16040 (QOM21_16045) - 3655182..3657023 (-) 1842 WP_407550761.1 BACON domain-containing protein -
  QOM21_RS16045 (QOM21_16050) radA 3657322..3658734 (+) 1413 WP_398558202.1 DNA repair protein RadA Machinery gene
  QOM21_RS16050 (QOM21_16055) disA 3658862..3660007 (+) 1146 WP_407550764.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  QOM21_RS16055 (QOM21_16060) - 3660078..3661073 (-) 996 WP_407550765.1 NAD-dependent epimerase/dehydratase family protein -
  QOM21_RS16060 (QOM21_16065) - 3661255..3662097 (-) 843 WP_407550767.1 hypothetical protein -
  QOM21_RS16065 (QOM21_16070) - 3662359..3662847 (-) 489 WP_407550768.1 pyridoxamine 5'-phosphate oxidase family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49519.61 Da        Isoelectric Point: 7.7063

>NTDB_id=771370 QOM21_RS16045 WP_398558202.1 3657322..3658734(+) (radA) [Streptomyces sp. Pv4-95 voucher LV 740]
MATRKTSAKERPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAPGRVTTAALPIGQVDGRQATARSTGVPE
LDRVLGGGLVPGAVALVAGEPGVGKSTLLLDVAAKAASGDHRTLYVTGEESASQVRLRADRIGAIDDHLYLAAETDLSAV
LGHLDTVKPSLLILDSVQTVASPEIEGAPGGMAQVREVAGALIRASKDRAMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLSEAARLGFTHALVPSDPGKIPDGMRVLEVADVGQALSVLPKRVRREAPQEEEQRR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=771370 QOM21_RS16045 WP_398558202.1 3657322..3658734(+) (radA) [Streptomyces sp. Pv4-95 voucher LV 740]
ATGGCAACCCGTAAAACATCGGCCAAGGAGCGCCCCTCCTACCGCTGCACCGAGTGCGGATGGACGACCGCGAAGTGGCT
CGGCCGCTGCCCGGAGTGCCAGGCGTGGGGCACGGTCGAGGAGTTCGGCGGCGCCCCCGCGGTGCGCACCACCGCGCCCG
GCCGGGTCACCACCGCCGCGCTGCCCATCGGTCAGGTCGACGGGCGGCAGGCCACCGCCCGCTCGACCGGTGTGCCGGAG
CTGGACCGGGTGCTGGGCGGCGGCCTGGTGCCCGGCGCGGTGGCACTGGTCGCCGGGGAGCCCGGCGTCGGCAAGTCCAC
CCTCCTGCTGGACGTCGCCGCCAAGGCCGCCTCCGGCGACCACCGCACGCTGTACGTCACCGGGGAGGAGTCCGCGAGCC
AGGTCCGGCTGCGCGCCGACCGCATCGGCGCCATCGACGACCACCTGTATCTGGCGGCCGAGACCGATCTGTCCGCCGTG
CTCGGCCACCTGGACACCGTCAAGCCGTCGCTGCTGATCCTGGACTCGGTGCAGACCGTCGCCTCCCCGGAGATCGAGGG
GGCTCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCGCTGATCCGCGCGTCCAAGGACCGCGCGATGTCCACGC
TCCTGGTCGGCCACGTCACCAAGGACGGCGCCATCGCGGGCCCCCGTCTGCTGGAGCATCTCGTCGATGTGGTCCTGAGC
TTCGAGGGCGACCGGCACGCCCGGCTGCGCCTGGTGCGCGGCGTCAAGAACCGCTACGGCACCACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCGGGCCTCTTCCTGACGCGCCGCGCCGAGCCGGTGC
CCGGCACGTGCCTGACGGTCACCCTCGAAGGCCGCCGCCCACTGGTCGCCGAGGTCCAGGCGCTCACCGTCGACTCCCAG
ATCCCCTCCCCGCGGCGCACCACCTCCGGGCTGGAGACCTCCCGGGTCTCGATGATGCTGGCCGTCCTGGAGCAGCGCGG
CCGGATCAGCGCGCTGGGCAAGCGCGACATCTACAGCGCGACGGTCGGCGGCGTGAAGCTGACGGAGCCGGCCGCGGACC
TCGCCGTGGCGCTCGCGCTGGCCAGCGCGGCGAGCGACACCCCGCTGCCGAAGAATCTCGTCGCCATCGGCGAGGTGGGG
CTCGCGGGCGAGGTCAGGCGGGTCACCGGAGTGCAGCGCAGACTGTCCGAGGCGGCCCGGCTCGGCTTCACCCACGCCCT
GGTCCCGTCCGACCCCGGCAAGATCCCCGACGGCATGCGGGTGCTGGAGGTGGCCGACGTCGGGCAGGCGCTGAGCGTGC
TCCCCAAGCGGGTGCGACGGGAGGCCCCACAGGAAGAGGAGCAGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

AAA domain (AAA_25)

(79-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae TIGR4

43.142

96.17

0.415
  radA Streptococcus pneumoniae D39

43.142

96.17

0.415
  radA Streptococcus pneumoniae R6

43.142

96.17

0.415
  radA Streptococcus pneumoniae Rx1

43.142

96.17

0.415
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.92

96.17

0.413
  radA Streptococcus mitis SK321

44.522

91.277

0.406
  radA Streptococcus mitis NCTC 12261

44.522

91.277

0.406