Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QPK52_RS12035 Genome accession   NZ_CP127170
Coordinates   2661685..2662284 (-) Length   199 a.a.
NCBI ID   WP_093657343.1    Uniprot ID   A0A1I4IVR4
Organism   Streptomyces sp. KL2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2656685..2667284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK52_RS11995 - 2656818..2657195 (-) 378 WP_410537451.1 YciI family protein -
  QPK52_RS12000 - 2657331..2657528 (-) 198 WP_410540306.1 DUF397 domain-containing protein -
  QPK52_RS12005 - 2657521..2658375 (-) 855 WP_410537452.1 helix-turn-helix domain-containing protein -
  QPK52_RS12010 - 2658489..2658734 (+) 246 WP_410537454.1 hypothetical protein -
  QPK52_RS12015 - 2658731..2658946 (+) 216 WP_410537455.1 hypothetical protein -
  QPK52_RS12020 - 2658949..2659176 (+) 228 WP_410540307.1 hypothetical protein -
  QPK52_RS12025 - 2659484..2660857 (+) 1374 WP_410537456.1 FG-GAP-like repeat-containing protein -
  QPK52_RS12030 - 2660991..2661692 (-) 702 WP_410537458.1 DUF5063 domain-containing protein -
  QPK52_RS12035 recR 2661685..2662284 (-) 600 WP_093657343.1 recombination mediator RecR Machinery gene
  QPK52_RS12040 - 2662410..2662745 (-) 336 WP_410537459.1 YbaB/EbfC family nucleoid-associated protein -
  QPK52_RS12045 - 2662930..2665257 (-) 2328 WP_410537460.1 DNA polymerase III subunit gamma and tau -
  QPK52_RS12060 - 2666044..2666727 (-) 684 WP_177213930.1 hypothetical protein -
  QPK52_RS12065 - 2666724..2667095 (-) 372 WP_410537461.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21818.01 Da        Isoelectric Point: 4.8865

>NTDB_id=771313 QPK52_RS12035 WP_093657343.1 2661685..2662284(-) (recR) [Streptomyces sp. KL2]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPADVRRLAHALTEVKEKVRFCEVCGNVAEAERCRVCQDPRRDPSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMVS
SMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=771313 QPK52_RS12035 WP_093657343.1 2661685..2662284(-) (recR) [Streptomyces sp. KL2]
GTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAACCGGCGGACGTCCGCCGGCTCGCCCACGCGCTGACCGAGGTGAAGGAGAAAGTCC
GGTTCTGCGAGGTCTGCGGCAACGTCGCGGAGGCCGAGCGGTGCAGGGTCTGCCAGGACCCGCGCCGCGACCCGTCGGTC
ATCTGCGTCGTGGAGGAGCCCAAGGACGTCGTGGCCATCGAGCGGACGCGCGAGTTCCGGGGGCGCTACCACGTCCTCGG
CGGTGCGATCAGCCCGATCGAGGGCGTGGGCCCGGACGATCTGCGGATCAGGGAACTGCTGGCCAGGCTCGCCGACGGCA
CCGTCACCGAGCTCATCCTGGCCACCGACCCGAACCTCGAAGGGGAGGCGACGGCCACCTACCTCGCGCGCATGGTGTCC
TCCATGGGCCTGCGTGTGACCAGGCTGGCCAGCGGCCTCCCCGTCGGAGGAGACCTGGAGTACGCCGACGAGGTCACGCT
GGGACGTGCCTTCGAGGGGAGAAGACTGCTCGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(79-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I4IVR4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.082

98.492

0.533
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

44.845

97.487

0.437