Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   QPK52_RS11095 Genome accession   NZ_CP127170
Coordinates   2462780..2464258 (+) Length   492 a.a.
NCBI ID   WP_410537282.1    Uniprot ID   -
Organism   Streptomyces sp. KL2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2457780..2469258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK52_RS11075 - 2458028..2458837 (-) 810 WP_410540294.1 sugar phosphate isomerase/epimerase family protein -
  QPK52_RS11080 - 2458928..2459869 (-) 942 WP_410537279.1 Ppx/GppA family phosphatase -
  QPK52_RS11085 - 2459936..2460841 (+) 906 WP_410537280.1 hypothetical protein -
  QPK52_RS11090 - 2460885..2462519 (-) 1635 WP_410537281.1 BACON domain-containing protein -
  QPK52_RS11095 radA/sms 2462780..2464258 (+) 1479 WP_410537282.1 DNA repair protein RadA Machinery gene
  QPK52_RS11100 disA 2464307..2465407 (+) 1101 WP_410537283.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  QPK52_RS11105 - 2465531..2466361 (-) 831 WP_410537284.1 hypothetical protein -
  QPK52_RS11110 - 2466588..2467229 (+) 642 WP_410537285.1 phosphatase PAP2 family protein -
  QPK52_RS11115 - 2467379..2468341 (+) 963 WP_410537286.1 A/G-specific adenine glycosylase -
  QPK52_RS11120 - 2468506..2468955 (-) 450 WP_410537287.1 VOC family protein -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 51818.92 Da        Isoelectric Point: 8.2584

>NTDB_id=771309 QPK52_RS11095 WP_410537282.1 2462780..2464258(+) (radA/sms) [Streptomyces sp. KL2]
MAARKSSAKDRPAYRCTECGYTTAKWLGRCPECHAWGTVEETGGTPAVRTTAPGRVSSPALPIGQVNGQVATARSTGVPE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAADADRRTLYVTGEESAGQVRLRADRIGAISDHLYLAAETDLSAV
LGHLDEVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLQ
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQSLTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRINALGKRDVYTATVGGVRLSEPAADLAMALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAARLGFTHALVPTDPGRVPAGMRVREVADIGEALRVLPARPARSERSERSGRDGPEQPGRDGS
DRSTPHEGRSRR

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=771309 QPK52_RS11095 WP_410537282.1 2462780..2464258(+) (radA/sms) [Streptomyces sp. KL2]
ATGGCTGCCCGCAAGTCGTCCGCCAAGGACCGCCCCGCCTACCGCTGCACCGAGTGCGGCTACACCACCGCCAAGTGGCT
CGGCCGCTGCCCGGAGTGCCACGCCTGGGGCACCGTCGAGGAGACCGGCGGCACCCCGGCCGTCCGCACCACCGCGCCCG
GCCGGGTCTCGTCCCCCGCGCTGCCCATCGGCCAGGTGAACGGGCAGGTGGCCACCGCGCGCAGCACGGGCGTGCCCGAG
CTGGACAGGGTGCTGGGCGGCGGTCTGGTGCCGGGCGCGGTGGTGCTGCTGGCGGGCGAGCCCGGAGTGGGCAAGTCCAC
GCTCCTGCTGGACGTCGCGGCCAAGGCGGCCGACGCCGACCGCCGCACGCTCTACGTCACCGGCGAGGAGTCGGCCGGGC
AGGTGCGGCTGCGGGCGGACCGGATCGGGGCGATAAGCGACCACCTGTACCTGGCGGCCGAGACGGACCTGTCGGCCGTC
CTGGGCCATCTGGACGAGGTGAAGCCCTCGCTGCTCGTCCTGGACTCGGTGCAGACGGTCGCCTCCCCCGAGATCGACGG
CGCGCCCGGCGGCATGGCCCAGGTGCGGGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGTCCACGC
TGCTGGTGGGCCACGTCACCAAGGACGGTGCCATCGCCGGTCCGCGCCTGCTGGAGCACCTGGTGGACGTGGTCCTGCAG
TTCGAGGGCGACCGGCACGCCCGGCTGCGGCTGGTGCGCGGTGTGAAGAACCGCTACGGCGCCACCGACGAGGTGGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGTCTGGCCGACCCGTCGGGCCTCTTCCTCACCCGCCGGGACGAGCCCGTGC
CCGGCACCTGTCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTGGTGGCCGAGGTGCAGTCGCTGACGGTGGACTCCCAG
ATCCCCTCCCCCCGGCGCACCACGTCCGGGCTGGAGACCTCGCGCGTGTCGATGATGCTGGCCGTGCTGGAGCAGCGGGG
CCGGATCAACGCGCTGGGCAAGCGGGACGTCTACACCGCCACCGTCGGCGGGGTGCGGCTGTCGGAGCCCGCGGCCGACC
TGGCGATGGCGCTCGCGCTGGCCAGCGCCGCCAGCGACACCCCGCTCCCGAAGAATCTGGTGGCCATCGGCGAGGTGGGG
CTGGCCGGCGAGGTCAGGCGGGTGACGGGCGTGCAGCGCCGGCTGGCGGAGGCCGCGCGGCTGGGCTTCACCCACGCTCT
GGTGCCCACCGATCCGGGCAGGGTGCCGGCGGGGATGCGGGTGCGGGAGGTGGCTGACATAGGGGAGGCGCTGCGGGTCC
TGCCCGCCCGGCCGGCGCGGTCGGAGCGGTCGGAGCGGTCCGGCCGCGACGGGCCCGAACAGCCCGGCCGCGACGGGTCC
GACCGGAGCACGCCACACGAGGGCCGGAGCCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(79-223)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.833

92.276

0.404
  radA Streptococcus pneumoniae Rx1

42.572

91.667

0.39
  radA Streptococcus pneumoniae D39

42.572

91.667

0.39
  radA Streptococcus pneumoniae R6

42.572

91.667

0.39
  radA Streptococcus pneumoniae TIGR4

42.572

91.667

0.39
  radA Streptococcus mitis SK321

43.56

86.789

0.378
  radA Streptococcus mitis NCTC 12261

43.56

86.789

0.378