Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QQS40_RS04225 Genome accession   NZ_CP127167
Coordinates   827243..827785 (+) Length   180 a.a.
NCBI ID   WP_289902109.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain HP01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 822243..832785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQS40_RS11220 - 823181..823873 (-) 693 Protein_821 penicillin-binding protein 1A -
  QQS40_RS04210 - 823949..825799 (-) 1851 Protein_822 penicillin-binding protein 1A -
  QQS40_RS04215 comA 825899..826747 (+) 849 WP_289902111.1 competence protein ComA Machinery gene
  QQS40_RS04220 comB 826734..827246 (+) 513 WP_289902110.1 competence protein ComB Machinery gene
  QQS40_RS04225 comC 827243..827785 (+) 543 WP_289902109.1 competence protein ComC Machinery gene
  QQS40_RS04230 - 827824..828168 (+) 345 WP_329506359.1 pilus assembly protein PilP -
  QQS40_RS04235 comE 828170..829555 (+) 1386 WP_329506361.1 type IV pilus secretin PilQ Machinery gene
  QQS40_RS04240 - 829575..830264 (+) 690 WP_289902165.1 ComF family protein -
  QQS40_RS04245 nfuA 830378..830962 (+) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -
  QQS40_RS04250 comM 831006..832535 (-) 1530 WP_128786785.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 21052.14 Da        Isoelectric Point: 6.6441

>NTDB_id=771255 QQS40_RS04225 WP_289902109.1 827243..827785(+) (comC) [Haemophilus parainfluenzae strain HP01]
MRNFINELVQKSAQSWFGRWLRLPQMVHAAFWLSALSAVIFLPVFRYVENSNELHRLDAELSLQQQEWDKQEKILQTLRQ
KSDSRQLSPELANSVLPINQHVQALLNGRLRALDLRWDFSQHTLLHLSLQGYFVDLQQFLTALLNDVPTLSLTQLNIKKL
DEEENASITCELIFQLNKDK

Nucleotide


Download         Length: 543 bp        

>NTDB_id=771255 QQS40_RS04225 WP_289902109.1 827243..827785(+) (comC) [Haemophilus parainfluenzae strain HP01]
ATGAGGAACTTTATCAATGAGCTAGTTCAAAAAAGTGCGCAAAGTTGGTTTGGGAGATGGCTTCGATTACCTCAAATGGT
CCATGCTGCCTTTTGGTTGAGTGCATTAAGTGCAGTCATCTTTTTACCTGTTTTTCGTTACGTTGAAAATAGCAACGAAC
TACATCGACTTGACGCAGAATTGAGTTTGCAGCAGCAAGAGTGGGATAAACAGGAAAAGATTTTACAAACCTTAAGGCAA
AAGTCAGACAGCCGACAACTTTCTCCTGAATTGGCTAACTCTGTGTTGCCGATTAATCAGCATGTACAGGCGCTGTTAAA
TGGGCGACTTCGAGCGTTGGATTTACGTTGGGATTTTTCTCAACATACTTTGTTGCATTTGTCGTTACAAGGCTATTTTG
TCGATTTACAGCAATTTTTGACCGCACTTTTAAACGATGTTCCTACACTTTCTTTAACTCAATTAAACATTAAGAAATTA
GATGAAGAGGAAAATGCTTCTATTACATGCGAGTTAATTTTCCAACTAAATAAGGACAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Haemophilus influenzae 86-028NP

40.223

99.444

0.4
  comC Haemophilus influenzae Rd KW20

39.665

99.444

0.394