Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   QQS40_RS04215 Genome accession   NZ_CP127167
Coordinates   825899..826747 (+) Length   282 a.a.
NCBI ID   WP_289902111.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain HP01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 820899..831747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQS40_RS04200 thiE 821080..821760 (+) 681 WP_289902114.1 thiamine phosphate synthase -
  QQS40_RS04205 - 821744..823057 (+) 1314 WP_329506353.1 MFS transporter -
  QQS40_RS11220 - 823181..823873 (-) 693 Protein_821 penicillin-binding protein 1A -
  QQS40_RS04210 - 823949..825799 (-) 1851 Protein_822 penicillin-binding protein 1A -
  QQS40_RS04215 comA 825899..826747 (+) 849 WP_289902111.1 competence protein ComA Machinery gene
  QQS40_RS04220 comB 826734..827246 (+) 513 WP_289902110.1 competence protein ComB Machinery gene
  QQS40_RS04225 comC 827243..827785 (+) 543 WP_289902109.1 competence protein ComC Machinery gene
  QQS40_RS04230 - 827824..828168 (+) 345 WP_329506359.1 pilus assembly protein PilP -
  QQS40_RS04235 comE 828170..829555 (+) 1386 WP_329506361.1 type IV pilus secretin PilQ Machinery gene
  QQS40_RS04240 - 829575..830264 (+) 690 WP_289902165.1 ComF family protein -
  QQS40_RS04245 nfuA 830378..830962 (+) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 32665.74 Da        Isoelectric Point: 5.1413

>NTDB_id=771253 QQS40_RS04215 WP_289902111.1 825899..826747(+) (comA) [Haemophilus parainfluenzae strain HP01]
MGIVPRKQLKQKIGVSKQQDNLYFVWLDEFYKVQSICLNGQQKDIFPQLLPHLPQKANQCCFIGSISPHLTWSKTLILPQ
TLNAQECEQQCRFILQKELPIPLDELWFDYLAMPLKQGFRLDITAIRQESANAELEKYLPLKLTALDSLNHSILRAFYAI
LGQEPINTLFLYQDQQGCLAVCERLQQRQVLQSQGDLSELYQQFTQRFPETIEQIYMYQTPDILNSHTIELLSQDWQRIE
TDFPFIALGNALWQTDLKLVDLSLKPAALLPLVNRESGDVKP

Nucleotide


Download         Length: 849 bp        

>NTDB_id=771253 QQS40_RS04215 WP_289902111.1 825899..826747(+) (comA) [Haemophilus parainfluenzae strain HP01]
ATGGGAATTGTTCCTAGAAAGCAGCTAAAACAAAAAATTGGTGTGAGTAAACAACAAGATAACCTCTATTTTGTTTGGCT
AGATGAATTCTACAAAGTTCAATCTATTTGCTTAAATGGACAACAAAAGGACATTTTCCCCCAGTTATTACCTCATTTAC
CTCAAAAAGCGAACCAATGTTGTTTTATTGGTTCCATTTCCCCCCATTTGACTTGGTCTAAAACGCTTATTTTACCGCAA
ACACTCAATGCTCAGGAGTGTGAACAACAATGTCGTTTTATTTTGCAAAAAGAATTGCCGATTCCGTTGGATGAATTATG
GTTTGATTATCTTGCCATGCCATTAAAACAAGGTTTCCGTTTGGATATCACGGCGATTCGACAAGAAAGCGCCAATGCAG
AATTAGAAAAATATTTGCCGCTAAAATTGACCGCACTTGATTCACTGAATCACAGTATTTTACGTGCATTTTATGCCATT
TTAGGTCAAGAGCCGATTAACACTTTATTTTTATATCAAGATCAACAAGGATGTCTCGCCGTTTGTGAACGCTTACAACA
ACGACAAGTTTTGCAATCTCAAGGTGATTTATCCGAACTTTATCAACAATTTACCCAGCGTTTTCCTGAAACCATAGAAC
AGATTTATATGTATCAAACGCCCGATATATTAAATTCACACACAATCGAATTACTGTCTCAGGATTGGCAGCGTATCGAA
ACAGATTTTCCTTTCATCGCCTTAGGTAATGCACTTTGGCAAACCGATTTAAAGCTAGTGGATTTATCTTTAAAACCAGC
CGCACTTTTGCCTTTAGTTAATCGGGAGAGTGGTGATGTTAAGCCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

49.603

89.362

0.443
  comA Haemophilus influenzae Rd KW20

49.603

89.362

0.443