Detailed information NTG0770909

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PCP45_RS19195
• Genome accession: NZ_CP115270
• Coordinates: 4023274..4024146 (-)
• Length: 290 a.a.
• NCBI ID: WP_134279316.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain F019
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4018274..4029146

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP45_RS19150 (PCP45_19155)	-	4019135..4019305 (-)	171	WP_003094672.1	DUF3094 family protein	-
PCP45_RS19155 (PCP45_19160)	-	4019331..4019780 (-)	450	WP_003094670.1	MOSC domain-containing protein	-
PCP45_RS19160 (PCP45_19165)	-	4019777..4020406 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
PCP45_RS19165 (PCP45_19170)	-	4020539..4020964 (+)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
PCP45_RS19170 (PCP45_19175)	-	4020961..4021431 (+)	471	WP_171892802.1	FAD/FMN-containing dehydrogenase	-
PCP45_RS19175 (PCP45_19180)	-	4021428..4022117 (+)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
PCP45_RS19180 (PCP45_19185)	-	4022223..4022432 (+)	210	WP_003094660.1	hypothetical protein	-
PCP45_RS19185 (PCP45_19190)	yacG	4022469..4022669 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PCP45_RS19190 (PCP45_19195)	coaE	4022666..4023277 (-)	612	WP_003094654.1	dephospho-CoA kinase	-
PCP45_RS19195 (PCP45_19200)	pilD	4023274..4024146 (-)	873	WP_134279316.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PCP45_RS19200 (PCP45_19205)	pilC	4024147..4025364 (-)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
PCP45_RS19205 (PCP45_19210)	pilB	4025368..4027068 (-)	1701	WP_128672463.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PCP45_RS19210 (PCP45_19215)	-	4027299..4027763 (+)	465	WP_124089607.1	pilin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31873.90 Da
• Isoelectric Point: 7.7068

>NTDB_id=770909 PCP45_RS19195 WP_134279316.1 4023274..4024146(-) (pilD) [Pseudomonas aeruginosa strain F019]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESSTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=770909 PCP45_RS19195 WP_134279316.1 4023274..4024146(-) (pilD) [Pseudomonas aeruginosa strain F019]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATACCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTATGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACTATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCAGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469