Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP45_RS18460 Genome accession   NZ_CP115270
Coordinates   3886767..3887324 (-) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain F019     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3881767..3892324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP45_RS18445 (PCP45_18450) pilY1 3881859..3885350 (-) 3492 WP_171892806.1 type 4a pilus biogenesis protein PilY1 -
  PCP45_RS18450 (PCP45_18455) pilX 3885362..3885949 (-) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  PCP45_RS18455 (PCP45_18460) pilW 3885946..3886770 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PCP45_RS18460 (PCP45_18465) pilV 3886767..3887324 (-) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  PCP45_RS18465 (PCP45_18470) - 3887315..3887821 (-) 507 WP_003110423.1 GspH/FimT family pseudopilin -
  PCP45_RS18470 (PCP45_18475) - 3887927..3888436 (-) 510 WP_171892805.1 GspH/FimT family pseudopilin -
  PCP45_RS18475 (PCP45_18480) thiO 3888571..3889665 (+) 1095 WP_171892804.1 glycine oxidase ThiO -
  PCP45_RS18480 (PCP45_18485) pilR 3889711..3891048 (-) 1338 WP_003110427.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=770905 PCP45_RS18460 WP_003094697.1 3886767..3887324(-) (pilV) [Pseudomonas aeruginosa strain F019]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=770905 PCP45_RS18460 WP_003094697.1 3886767..3887324(-) (pilV) [Pseudomonas aeruginosa strain F019]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGTCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978