Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QQX47_RS15745 Genome accession   NZ_CP127122
Coordinates   3383044..3383688 (-) Length   214 a.a.
NCBI ID   WP_132765477.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Ned_5_BIM     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3378044..3388688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQX47_RS15735 (QQX47_15735) pgsA 3380623..3381183 (-) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QQX47_RS15740 (QQX47_15740) uvrC 3381217..3383043 (-) 1827 WP_003097551.1 excinuclease ABC subunit UvrC -
  QQX47_RS15745 (QQX47_15745) letA 3383044..3383688 (-) 645 WP_132765477.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QQX47_RS15750 (QQX47_15750) pqsH 3384030..3385178 (-) 1149 WP_180361434.1 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  QQX47_RS15755 (QQX47_15755) - 3385796..3386824 (+) 1029 WP_003097554.1 AraC family transcriptional regulator -
  QQX47_RS15760 (QQX47_15760) - 3386840..3388054 (-) 1215 WP_023118553.1 MFS transporter -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23666.56 Da        Isoelectric Point: 5.6918

>NTDB_id=770781 QQX47_RS15745 WP_132765477.1 3383044..3383688(-) (letA) [Pseudomonas aeruginosa strain Ned_5_BIM]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAADYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=770781 QQX47_RS15745 WP_132765477.1 3383044..3383688(-) (letA) [Pseudomonas aeruginosa strain Ned_5_BIM]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAACTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCCTGGAGGCAACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGATCCGTTCCCCACCCGCCTCATGCAGGCCGGCGCCGCCGACTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGTCCAGGCGATTCGCCAGGTCTTCGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAACTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACCGTGAATACCTATCGCTACCG
CATCTTCGAGAAGCTCTCGATCACTAGCGACGTGGAGCTGGCGCTGCTCGCCGTCCGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.028

98.598

0.533
  letA Legionella pneumophila strain ERS1305867

54.028

98.598

0.533