Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PCP63_RS25130 | Genome accession | NZ_CP115258 |
| Coordinates | 5471599..5472471 (-) | Length | 290 a.a. |
| NCBI ID | WP_023084740.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain F028 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5466599..5477471
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PCP63_RS25085 (PCP63_25080) | - | 5467460..5467630 (-) | 171 | WP_003094672.1 | DUF3094 family protein | - |
| PCP63_RS25090 (PCP63_25085) | - | 5467656..5468105 (-) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| PCP63_RS25095 (PCP63_25090) | - | 5468102..5468731 (-) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| PCP63_RS25100 (PCP63_25095) | - | 5468864..5469289 (+) | 426 | WP_009875877.1 | GNAT family N-acetyltransferase | - |
| PCP63_RS25105 (PCP63_25100) | - | 5469286..5469756 (+) | 471 | WP_003094664.1 | hypothetical protein | - |
| PCP63_RS25110 (PCP63_25105) | - | 5469753..5470442 (+) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| PCP63_RS25115 (PCP63_25110) | - | 5470548..5470757 (+) | 210 | WP_003120946.1 | hypothetical protein | - |
| PCP63_RS25120 (PCP63_25115) | yacG | 5470794..5470994 (-) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| PCP63_RS25125 (PCP63_25120) | coaE | 5470991..5471602 (-) | 612 | WP_003112838.1 | dephospho-CoA kinase | - |
| PCP63_RS25130 (PCP63_25125) | pilD | 5471599..5472471 (-) | 873 | WP_023084740.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| PCP63_RS25135 (PCP63_25130) | pilC | 5472472..5473689 (-) | 1218 | WP_003107299.1 | type II secretion system F family protein | Machinery gene |
| PCP63_RS25140 (PCP63_25135) | pilB | 5473693..5475393 (-) | 1701 | WP_096253228.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PCP63_RS25145 (PCP63_25140) | - | 5475623..5476087 (+) | 465 | WP_031630343.1 | pilin | - |
| PCP63_RS25155 (PCP63_25150) | nadC | 5476290..5477138 (-) | 849 | WP_096253229.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31843.88 Da Isoelectric Point: 7.7068
>NTDB_id=770606 PCP63_RS25130 WP_023084740.1 5471599..5472471(-) (pilD) [Pseudomonas aeruginosa strain F028]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=770606 PCP63_RS25130 WP_023084740.1 5471599..5472471(-) (pilD) [Pseudomonas aeruginosa strain F028]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.714 |
96.552 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.281 |
95.862 |
0.472 |