Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP14_RS05000 Genome accession   NZ_CP115251
Coordinates   1053038..1053595 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F035     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1048038..1058595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP14_RS04980 (PCP14_04970) pilR 1049314..1050651 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  PCP14_RS04985 (PCP14_04975) thiO 1050697..1051791 (-) 1095 WP_003134931.1 glycine oxidase ThiO -
  PCP14_RS04990 (PCP14_04980) - 1051926..1052435 (+) 510 WP_023088572.1 GspH/FimT family pseudopilin -
  PCP14_RS04995 (PCP14_04985) - 1052541..1053047 (+) 507 WP_003110423.1 GspH/FimT family pseudopilin -
  PCP14_RS05000 (PCP14_04990) pilV 1053038..1053595 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PCP14_RS05005 (PCP14_04995) pilW 1053592..1054416 (+) 825 WP_031759378.1 type 4a pilus minor pilin PilW -
  PCP14_RS05010 (PCP14_05000) pilX 1054413..1055000 (+) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  PCP14_RS05015 (PCP14_05005) pilY1 1055012..1058503 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=770345 PCP14_RS05000 WP_003119423.1 1053038..1053595(+) (pilV) [Pseudomonas aeruginosa strain F035]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=770345 PCP14_RS05000 WP_003119423.1 1053038..1053595(+) (pilV) [Pseudomonas aeruginosa strain F035]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995