Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PCP48_RS10410 Genome accession   NZ_CP115248
Coordinates   2192287..2192922 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain F038     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2187287..2197922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP48_RS10395 (PCP48_10385) - 2187993..2189237 (+) 1245 WP_023085389.1 lipoprotein-releasing ABC transporter permease subunit -
  PCP48_RS10400 (PCP48_10390) - 2189325..2189858 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  PCP48_RS10405 (PCP48_10395) comA 2189989..2192214 (+) 2226 WP_003113988.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PCP48_RS10410 (PCP48_10400) exbB 2192287..2192922 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PCP48_RS10415 (PCP48_10405) - 2192919..2193359 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  PCP48_RS10420 (PCP48_10410) lpxK 2193359..2194357 (+) 999 WP_025271185.1 tetraacyldisaccharide 4'-kinase -
  PCP48_RS10425 (PCP48_10415) - 2194395..2194580 (+) 186 WP_003091157.1 Trm112 family protein -
  PCP48_RS10430 (PCP48_10420) kdsB 2194580..2195344 (+) 765 WP_003130694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PCP48_RS10435 (PCP48_10425) - 2195344..2195808 (+) 465 WP_033983129.1 low molecular weight protein-tyrosine-phosphatase -
  PCP48_RS10440 (PCP48_10430) murB 2195805..2196824 (+) 1020 WP_025271183.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=770245 PCP48_RS10410 WP_003091163.1 2192287..2192922(+) (exbB) [Pseudomonas aeruginosa strain F038]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=770245 PCP48_RS10410 WP_003091163.1 2192287..2192922(+) (exbB) [Pseudomonas aeruginosa strain F038]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81