Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QP019_RS07730 Genome accession   NZ_CP126978
Coordinates   1566891..1568099 (-) Length   402 a.a.
NCBI ID   WP_285095951.1    Uniprot ID   -
Organism   Gallibacterium anatis strain YJ922     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1561891..1573099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP019_RS07690 (QP019_07690) - 1561988..1562647 (+) 660 WP_285093033.1 formate dehydrogenase subunit gamma -
  QP019_RS07695 (QP019_07695) fdhE 1562649..1563572 (+) 924 WP_285095946.1 formate dehydrogenase accessory protein FdhE -
  QP019_RS07700 (QP019_07700) - 1563723..1564859 (-) 1137 WP_285095947.1 transposase -
  QP019_RS07705 (QP019_07705) - 1564891..1565022 (-) 132 WP_285095948.1 hypothetical protein -
  QP019_RS07710 (QP019_07710) - 1565053..1565325 (-) 273 WP_039084192.1 GNAT family N-acetyltransferase -
  QP019_RS07715 (QP019_07715) yacG 1565407..1565625 (-) 219 WP_285095949.1 DNA gyrase inhibitor YacG -
  QP019_RS07720 (QP019_07720) coaE 1565615..1566247 (-) 633 WP_285095950.1 dephospho-CoA kinase -
  QP019_RS07725 (QP019_07725) - 1566262..1566894 (-) 633 WP_230589045.1 prepilin peptidase -
  QP019_RS07730 (QP019_07730) pilC 1566891..1568099 (-) 1209 WP_285095951.1 type II secretion system F family protein Machinery gene
  QP019_RS07735 (QP019_07735) pilB 1568115..1569524 (-) 1410 WP_285095953.1 GspE/PulE family protein Machinery gene
  QP019_RS07740 (QP019_07740) pilA 1569541..1570002 (-) 462 WP_039148357.1 prepilin peptidase-dependent pilin Machinery gene
  QP019_RS07745 (QP019_07745) ampD 1570107..1570661 (+) 555 WP_285095954.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QP019_RS07750 (QP019_07750) - 1570748..1571083 (+) 336 WP_013746603.1 hypothetical protein -
  QP019_RS07755 (QP019_07755) - 1571192..1572586 (+) 1395 WP_094933117.1 chloride channel protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 45769.02 Da        Isoelectric Point: 9.7258

>NTDB_id=769732 QP019_RS07730 WP_285095951.1 1566891..1568099(-) (pilC) [Gallibacterium anatis strain YJ922]
MPEYRWKGKDQFGNSVKGVLIADDREQARQRLFAQGIFLSSLNKNWQFFPTLTLEKQAEFLLQFALLLQAEIPLKPALQM
LQESCDSTSLYQLIGRCLTALNSGFSLSTALKNEKQFLSEQEWQLLYSGEISAQLAKVMKQLADNKLRQLKLRQQMKKIM
FYPLMMLSVSMLLTVLLLLFIVPKFADLYDQQQHALPLITQVLLQSSQFLQNYLWQLLAVFVVGIVALRRCYLMFPSLRR
QLLKLACLVPSIQRLYLQLQQIQFYTILSSMLNSGITLQQSLATFVPQSGYQRSRAATESILAIEAQQCLQSLQAGQRFS
SGLSSRFIPYQAKQMIIIGENSGNLVQMLHYLAEQSQQNLSNQVEVFSKLLEPILMLIIGSIIGVVIAGMYLPIFNMGNV
VL

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=769732 QP019_RS07730 WP_285095951.1 1566891..1568099(-) (pilC) [Gallibacterium anatis strain YJ922]
ATGCCGGAATATCGTTGGAAAGGAAAAGATCAATTTGGTAATAGTGTCAAAGGAGTATTGATTGCGGACGATCGGGAACA
GGCACGTCAACGCCTTTTTGCACAAGGGATCTTTTTATCCTCATTAAATAAAAATTGGCAATTTTTTCCCACACTAACAT
TGGAGAAACAAGCTGAATTTTTATTGCAGTTCGCATTATTGTTGCAGGCAGAGATACCGTTGAAGCCGGCGTTGCAGATG
TTACAGGAAAGTTGTGATTCAACCTCTTTATACCAACTGATAGGGCGGTGCTTAACCGCATTGAACAGTGGTTTTTCATT
ATCAACGGCATTAAAAAATGAAAAGCAATTTTTATCGGAACAGGAGTGGCAATTGTTATACAGCGGTGAAATCAGCGCGC
AATTGGCAAAGGTAATGAAACAATTAGCGGATAATAAATTGCGACAACTAAAGTTACGGCAGCAGATGAAAAAAATAATG
TTTTATCCGTTAATGATGTTGTCGGTGTCAATGTTATTAACGGTGTTATTGCTGCTTTTTATTGTGCCTAAATTTGCTGA
TTTATATGATCAACAACAGCACGCCTTACCGTTGATTACACAAGTTTTATTACAGAGCTCGCAATTTTTGCAAAATTATC
TGTGGCAATTATTGGCAGTATTTGTCGTAGGCATTGTGGCGCTACGGCGGTGTTATCTGATGTTTCCTTCATTACGTCGG
CAATTATTGAAATTGGCTTGCTTAGTGCCATCAATTCAGCGGCTTTATTTGCAGTTACAACAAATTCAGTTTTATACCAT
TCTCTCTTCAATGTTAAATTCAGGCATAACCTTGCAACAGAGTTTAGCTACCTTTGTGCCTCAATCCGGTTATCAACGAA
GCCGAGCAGCAACAGAATCCATTTTAGCGATTGAAGCACAGCAATGTTTACAGAGCTTGCAGGCAGGGCAACGATTTTCT
TCAGGGTTGAGCAGCCGCTTTATTCCCTATCAGGCAAAACAGATGATTATTATCGGTGAAAATAGCGGCAATTTGGTGCA
GATGTTGCACTATTTAGCAGAACAGAGCCAACAAAATTTATCTAATCAAGTGGAGGTGTTTTCTAAATTATTGGAGCCGA
TATTAATGTTAATAATCGGCTCAATTATTGGTGTGGTTATTGCCGGTATGTATCTGCCGATTTTTAATATGGGCAATGTG
GTTTTATGA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(264-393)

Type II secretion system (T2SS), protein F (T2SSF)

(60-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

36.118

100

0.366
  pilC Haemophilus influenzae 86-028NP

35.872

100

0.363