Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PCP20_RS04640 | Genome accession | NZ_CP115225 |
| Coordinates | 977395..978267 (-) | Length | 290 a.a. |
| NCBI ID | WP_003125204.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain F054 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 972395..983267
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PCP20_RS04595 (PCP20_04600) | - | 973255..973425 (-) | 171 | WP_003094672.1 | DUF3094 family protein | - |
| PCP20_RS04600 (PCP20_04605) | - | 973451..973900 (-) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| PCP20_RS04605 (PCP20_04610) | - | 973897..974526 (-) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| PCP20_RS04610 (PCP20_04615) | - | 974660..975085 (+) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| PCP20_RS04615 (PCP20_04620) | - | 975082..975552 (+) | 471 | WP_010793791.1 | hypothetical protein | - |
| PCP20_RS04620 (PCP20_04625) | - | 975549..976238 (+) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| PCP20_RS04625 (PCP20_04630) | - | 976344..976553 (+) | 210 | WP_003094660.1 | hypothetical protein | - |
| PCP20_RS04630 (PCP20_04635) | yacG | 976590..976790 (-) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| PCP20_RS04635 (PCP20_04640) | coaE | 976787..977398 (-) | 612 | WP_010793792.1 | dephospho-CoA kinase | - |
| PCP20_RS04640 (PCP20_04645) | pilD | 977395..978267 (-) | 873 | WP_003125204.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| PCP20_RS04645 (PCP20_04650) | pilC | 978271..979491 (-) | 1221 | WP_009315898.1 | type 4a pilus biogenesis protein PilC | Machinery gene |
| PCP20_RS04650 (PCP20_04655) | pilB | 979495..981195 (-) | 1701 | WP_010793793.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PCP20_RS04655 (PCP20_04660) | pilA | 981427..981879 (+) | 453 | WP_024928732.1 | pilin | Machinery gene |
| PCP20_RS04665 (PCP20_04670) | nadC | 982056..982904 (-) | 849 | WP_003161760.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31839.89 Da Isoelectric Point: 7.7068
>NTDB_id=769696 PCP20_RS04640 WP_003125204.1 977395..978267(-) (pilD) [Pseudomonas aeruginosa strain F054]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=769696 PCP20_RS04640 WP_003125204.1 977395..978267(-) (pilD) [Pseudomonas aeruginosa strain F054]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATACTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTACCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATACTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTACCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.714 |
96.552 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.281 |
95.862 |
0.472 |