Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   QP020_RS02115 Genome accession   NZ_CP126977
Coordinates   458091..458651 (-) Length   186 a.a.
NCBI ID   WP_039081188.1    Uniprot ID   -
Organism   Gallibacterium anatis strain DFSO2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 453091..463651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP020_RS02095 (QP020_02095) - 453796..454416 (-) 621 WP_018347053.1 tetratricopeptide repeat protein -
  QP020_RS02100 (QP020_02100) hisS 454428..455711 (-) 1284 WP_285098730.1 histidine--tRNA ligase -
  QP020_RS02105 (QP020_02105) ispG 455733..456848 (-) 1116 WP_285091180.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  QP020_RS02110 (QP020_02110) - 456873..457946 (-) 1074 WP_285098732.1 RodZ domain-containing protein -
  QP020_RS02115 (QP020_02115) pilF 458091..458651 (-) 561 WP_039081188.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  QP020_RS02120 (QP020_02120) - 458672..459790 (-) 1119 WP_013745260.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  QP020_RS02125 (QP020_02125) folD 460109..460972 (-) 864 WP_285096637.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  QP020_RS02140 (QP020_02140) - 461430..461708 (-) 279 WP_018347058.1 hypothetical protein -
  QP020_RS02145 (QP020_02145) - 461705..461884 (-) 180 WP_013745256.1 hypothetical protein -
  QP020_RS02150 (QP020_02150) udk 462089..462745 (+) 657 WP_013745255.1 uridine kinase -
  QP020_RS02155 (QP020_02155) dcd 462761..463342 (+) 582 WP_285098735.1 dCTP deaminase -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20981.90 Da        Isoelectric Point: 9.1368

>NTDB_id=769663 QP020_RS02115 WP_039081188.1 458091..458651(-) (pilF) [Gallibacterium anatis strain DFSO2]
MNKTMIKLKFFILLSSLFTLFACSHSVSNKPLSANAAAAKTRVELGLAYLSQGNPALAKANLDKALQHTPNDYLPYLGLA
YFYQHTQQLKLAGEYYQKALSLSPENGDVLNNYATYLCSQRQFDTAFNFFEQALNSKAYYHFADTYENIAICAVLAGDQN
KTEQALTQLEKYSVDKAKNLRQRLHK

Nucleotide


Download         Length: 561 bp        

>NTDB_id=769663 QP020_RS02115 WP_039081188.1 458091..458651(-) (pilF) [Gallibacterium anatis strain DFSO2]
ATGAACAAAACAATGATTAAACTGAAATTTTTTATTCTGCTTTCCTCACTGTTTACGCTTTTTGCCTGTAGCCATTCAGT
TAGCAATAAACCGCTTTCCGCTAATGCCGCTGCGGCAAAAACACGTGTTGAATTAGGATTGGCTTATTTGTCGCAAGGCA
ATCCGGCATTGGCAAAAGCCAATTTAGATAAAGCGTTGCAACATACACCGAATGATTATTTGCCTTATCTAGGTTTGGCT
TATTTTTATCAACATACCCAACAACTCAAACTTGCCGGCGAATATTATCAAAAAGCGCTCTCTCTTTCGCCCGAGAATGG
CGATGTATTGAATAATTATGCAACTTACCTCTGCTCTCAACGCCAATTTGATACGGCATTTAACTTTTTTGAACAAGCAT
TAAACAGCAAAGCCTATTATCATTTTGCCGATACTTATGAAAACATTGCGATTTGTGCTGTTTTAGCCGGTGATCAAAAC
AAAACTGAACAAGCTTTAACCCAACTGGAGAAATATTCTGTCGATAAAGCGAAAAATTTGCGGCAACGTTTGCATAAATA
A

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_8)

(40-68)

Tetratricopeptide repeat (TPR_17)

(96-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Glaesserella parasuis strain SC1401

44.809

98.387

0.441
  pilF/pilF2 Haemophilus influenzae Rd KW20

46.988

89.247

0.419