Detailed information NTG0769598

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: QP018_RS00250
• Genome accession: NZ_CP126975
• Coordinates: 52733..53980 (-)
• Length: 415 a.a.
• NCBI ID: WP_013745610.1
• Uniprot ID: A0AB36DXJ3
• Organism: Gallibacterium anatis strain BJF12
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 47733..58980

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QP018_RS00230 (QP018_00230)	fruK	48435..49373 (-)	939	WP_285094302.1	1-phosphofructokinase	-
QP018_RS00235 (QP018_00235)	fruB	49378..50535 (-)	1158	Protein_45	fused PTS fructose transporter subunit IIA/HPr protein	-
QP018_RS00240 (QP018_00240)	-	50761..52062 (-)	1302	WP_264780064.1	anaerobic C4-dicarboxylate transporter	-
QP018_RS00245 (QP018_00245)	-	52193..52591 (-)	399	WP_018345828.1	YbaN family protein	-
QP018_RS00250 (QP018_00250)	clpX	52733..53980 (-)	1248	WP_013745610.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
QP018_RS00255 (QP018_00255)	clpP	53992..54579 (-)	588	WP_013745609.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
QP018_RS00260 (QP018_00260)	tig	54720..56021 (-)	1302	WP_018345830.1	trigger factor	-
QP018_RS00265 (QP018_00265)	-	56193..56759 (-)	567	WP_013745607.1	cytochrome b	-
QP018_RS00270 (QP018_00270)	-	56871..57686 (+)	816	WP_094933484.1	NAD(P)-dependent oxidoreductase	-

Sequence

Protein

• Length: 415 a.a.
• Molecular weight: 46156.76 Da
• Isoelectric Point: 4.9442

>NTDB_id=769598 QP018_RS00250 WP_013745610.1 52733..53980(-) (clpX) [Gallibacterium anatis strain BJF12]
MSDKPENNEKFYCSLCGKEKHEVGKLIAGVSGYICNECVETCHDLLMEEANKHQKEQEQEKPLEKLPTPHQIRAHLDDYV
IGQDQAKKILSVAVYNHYKRLRNNETDLDVELGKSNILLIGPTGSGKTLLAQTLARQINVPFAIADATTLTEAGYVGEDV
ENIIQRLLQNCDYDTEKAEQGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEFLKV
DTSKILFICGGAFSGLDKIIEKRTHKDRGIGFNANVQSKEKEHDIGELFAQVETEDLIKFGLIPEFVGRLPVVASLAELD
EEALIRILTVPKNALIKQYQALFTLENVELEFTPEALTAIAKKALARKTGARGLRSIVEGVLLDTMYDLPSLEGLKKVVV
DQDVIDNQALPKLEY

Nucleotide

• Length: 1248 bp

>NTDB_id=769598 QP018_RS00250 WP_013745610.1 52733..53980(-) (clpX) [Gallibacterium anatis strain BJF12]
ATGTCAGATAAACCAGAAAACAACGAAAAATTTTACTGCTCACTTTGTGGCAAAGAAAAACACGAAGTCGGCAAATTAAT
CGCCGGTGTATCCGGTTATATTTGCAATGAATGTGTGGAAACTTGCCACGATTTATTAATGGAAGAAGCCAATAAACATC
AAAAAGAGCAAGAACAGGAAAAACCGCTTGAAAAATTGCCTACTCCTCACCAAATTCGCGCACATTTGGATGATTATGTC
ATTGGACAAGATCAAGCGAAAAAAATCCTTTCCGTTGCTGTTTATAACCATTACAAACGTTTACGCAACAATGAAACCGA
TCTTGATGTTGAATTAGGCAAAAGTAACATTTTGCTTATCGGTCCGACCGGAAGCGGGAAAACATTATTGGCACAAACAT
TAGCTCGCCAAATTAATGTGCCTTTCGCCATTGCCGATGCAACTACGTTGACTGAAGCCGGTTATGTCGGTGAAGATGTG
GAAAATATTATCCAGCGGCTATTGCAAAATTGTGATTACGATACGGAAAAAGCGGAACAGGGTATTATTTATATTGATGA
AATCGATAAAATTACTCGTAAATCTGAAAATCCTTCCATTACCCGCGATGTTTCCGGTGAAGGTGTGCAACAAGCGTTAT
TAAAACTGATTGAAGGCACTATTGCCTCCGTTCCGCCTCAAGGCGGACGCAAACACCCACAGCAAGAGTTTTTGAAAGTG
GATACCTCAAAAATTCTGTTTATTTGTGGCGGTGCATTCTCTGGTTTGGATAAAATCATTGAAAAACGCACCCACAAAGA
TCGTGGAATCGGTTTTAATGCCAATGTACAAAGCAAAGAGAAAGAGCACGATATCGGTGAATTGTTCGCGCAAGTCGAAA
CTGAAGATTTAATTAAATTCGGTTTAATTCCTGAATTTGTCGGTCGTTTGCCGGTTGTAGCTTCATTGGCTGAATTGGAC
GAAGAAGCATTAATTCGCATTTTAACCGTGCCGAAAAATGCCTTAATCAAACAATATCAAGCGCTATTTACATTGGAAAA
TGTGGAGTTGGAATTCACTCCGGAAGCATTAACCGCCATTGCTAAAAAAGCACTGGCACGTAAAACCGGCGCTAGAGGAT
TACGTTCCATCGTCGAAGGCGTGCTGCTCGATACAATGTACGATCTTCCTTCTTTAGAGGGATTAAAGAAAGTCGTTGTA
GATCAGGATGTTATCGATAATCAAGCCCTTCCGAAATTAGAATACTAA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-47)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (319-393)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-312)

3D structure

• AlphaFold DB: A0AB36DXJ3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	57.212	100	0.573
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.025	95.904	0.528