Detailed information NTG0769586

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PCP16_RS01295
• Genome accession: NZ_CP115222
• Coordinates: 285814..286686 (+)
• Length: 290 a.a.
• NCBI ID: WP_023084740.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain F057
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 280814..291686

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP16_RS01280 (PCP16_01280)	-	282197..282661 (-)	465	WP_003122079.1	pilin	-
PCP16_RS01285 (PCP16_01285)	pilB	282892..284592 (+)	1701	WP_003122078.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PCP16_RS01290 (PCP16_01290)	pilC	284596..285813 (+)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
PCP16_RS01295 (PCP16_01295)	pilD	285814..286686 (+)	873	WP_023084740.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PCP16_RS01300 (PCP16_01300)	coaE	286683..287294 (+)	612	WP_003112838.1	dephospho-CoA kinase	-
PCP16_RS01305 (PCP16_01305)	yacG	287291..287491 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PCP16_RS01310 (PCP16_01310)	-	287528..287737 (-)	210	WP_003094660.1	hypothetical protein	-
PCP16_RS01315 (PCP16_01315)	-	287843..288532 (-)	690	WP_034075893.1	energy-coupling factor ABC transporter permease	-
PCP16_RS01320 (PCP16_01320)	-	288529..288999 (-)	471	WP_003094664.1	hypothetical protein	-
PCP16_RS01325 (PCP16_01325)	-	288996..289421 (-)	426	WP_003116252.1	GNAT family N-acetyltransferase	-
PCP16_RS01330 (PCP16_01330)	-	289554..290183 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
PCP16_RS01335 (PCP16_01335)	-	290180..290629 (+)	450	WP_034055507.1	MOSC domain-containing protein	-
PCP16_RS01340 (PCP16_01340)	-	290655..290825 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31843.88 Da
• Isoelectric Point: 7.7068

>NTDB_id=769586 PCP16_RS01295 WP_023084740.1 285814..286686(+) (pilD) [Pseudomonas aeruginosa strain F057]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=769586 PCP16_RS01295 WP_023084740.1 285814..286686(+) (pilD) [Pseudomonas aeruginosa strain F057]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472