Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QQA21_RS16365 Genome accession   NZ_CP126955
Coordinates   3313947..3314684 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O78:H4 strain APEC E123     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3308947..3319684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA21_RS16350 (QQA21_16350) clpC 3309401..3311974 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  QQA21_RS16355 (QQA21_16355) yfiH 3312104..3312835 (-) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  QQA21_RS16360 (QQA21_16360) rluD 3312832..3313812 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QQA21_RS16365 (QQA21_16365) comL 3313947..3314684 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QQA21_RS16370 (QQA21_16370) raiA 3314955..3315296 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QQA21_RS16375 (QQA21_16375) pheL 3315400..3315447 (+) 48 WP_001700969.1 pheA operon leader peptide PheL -
  QQA21_RS16380 (QQA21_16380) pheA 3315546..3316706 (+) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  QQA21_RS16385 (QQA21_16385) tyrA 3316749..3317870 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QQA21_RS16390 (QQA21_16390) aroF 3317881..3318951 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  QQA21_RS16395 (QQA21_16395) yfiL 3319161..3319526 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=769445 QQA21_RS16365 WP_000197686.1 3313947..3314684(+) (comL) [Escherichia coli O78:H4 strain APEC E123]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=769445 QQA21_RS16365 WP_000197686.1 3313947..3314684(+) (comL) [Escherichia coli O78:H4 strain APEC E123]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376