Detailed information NTG0769415

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PCP19_RS01605
• Genome accession: NZ_CP115215
• Coordinates: 357206..358078 (+)
• Length: 290 a.a.
• NCBI ID: WP_023084740.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain F062
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 352206..363078

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP19_RS01590 (PCP19_01585)	-	353589..354053 (-)	465	WP_329006229.1	pilin	-
PCP19_RS01595 (PCP19_01590)	pilB	354284..355984 (+)	1701	WP_003107297.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PCP19_RS01600 (PCP19_01595)	-	355988..357205 (+)	1218	Protein_312	type II secretion system F family protein	-
PCP19_RS01605 (PCP19_01600)	pilD	357206..358078 (+)	873	WP_023084740.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PCP19_RS01610 (PCP19_01605)	coaE	358075..358686 (+)	612	WP_003112838.1	dephospho-CoA kinase	-
PCP19_RS01615 (PCP19_01610)	yacG	358683..358883 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PCP19_RS01620 (PCP19_01615)	-	358920..359129 (-)	210	WP_020750398.1	hypothetical protein	-
PCP19_RS01625 (PCP19_01620)	-	359235..359924 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
PCP19_RS01630 (PCP19_01625)	-	359921..360391 (-)	471	WP_019486073.1	hypothetical protein	-
PCP19_RS01635 (PCP19_01630)	-	360388..360813 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
PCP19_RS01640 (PCP19_01635)	-	360946..361575 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
PCP19_RS01645 (PCP19_01640)	-	361572..362021 (+)	450	WP_023084741.1	MOSC domain-containing protein	-
PCP19_RS01650 (PCP19_01645)	-	362047..362217 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31843.88 Da
• Isoelectric Point: 7.7068

>NTDB_id=769415 PCP19_RS01605 WP_023084740.1 357206..358078(+) (pilD) [Pseudomonas aeruginosa strain F062]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=769415 PCP19_RS01605 WP_023084740.1 357206..358078(+) (pilD) [Pseudomonas aeruginosa strain F062]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472