Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP85_RS09260 Genome accession   NZ_CP115213
Coordinates   1982957..1983514 (-) Length   185 a.a.
NCBI ID   WP_003110422.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F063     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1977957..1988514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP85_RS09245 (PCP85_09255) pilY1 1978055..1981540 (-) 3486 WP_003134937.1 type 4a pilus biogenesis protein PilY1 -
  PCP85_RS09250 (PCP85_09260) pilX 1981552..1982139 (-) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  PCP85_RS09255 (PCP85_09265) pilW 1982136..1982960 (-) 825 WP_023092935.1 type 4a pilus minor pilin PilW -
  PCP85_RS09260 (PCP85_09270) pilV 1982957..1983514 (-) 558 WP_003110422.1 type 4a pilus minor pilin PilV Machinery gene
  PCP85_RS09265 (PCP85_09275) - 1983505..1984011 (-) 507 WP_003110423.1 GspH/FimT family pseudopilin -
  PCP85_RS09270 (PCP85_09280) - 1984117..1984626 (-) 510 WP_023092934.1 GspH/FimT family pseudopilin -
  PCP85_RS09275 (PCP85_09285) thiO 1984761..1985855 (+) 1095 WP_023092933.1 glycine oxidase ThiO -
  PCP85_RS09280 (PCP85_09290) pilR 1985901..1987238 (-) 1338 WP_003110427.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20072.23 Da        Isoelectric Point: 7.9204

>NTDB_id=769393 PCP85_RS09260 WP_003110422.1 1982957..1983514(-) (pilV) [Pseudomonas aeruginosa strain F063]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLMSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=769393 PCP85_RS09260 WP_003110422.1 1982957..1983514(-) (pilV) [Pseudomonas aeruginosa strain F063]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGATGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.378

100

0.984