Detailed information NTG0769247

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PCP23_RS04630
• Genome accession: NZ_CP115207
• Coordinates: 977299..978171 (+)
• Length: 290 a.a.
• NCBI ID: WP_023084740.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain F067
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 972299..983171

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP23_RS04615 (PCP23_04610)	-	973682..974146 (-)	465	WP_023086642.1	pilin	-
PCP23_RS04620 (PCP23_04615)	pilB	974377..976077 (+)	1701	WP_003107297.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PCP23_RS04625 (PCP23_04620)	pilC	976081..977298 (+)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
PCP23_RS04630 (PCP23_04625)	pilD	977299..978171 (+)	873	WP_023084740.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PCP23_RS04635 (PCP23_04630)	coaE	978168..978779 (+)	612	WP_003112838.1	dephospho-CoA kinase	-
PCP23_RS04640 (PCP23_04635)	yacG	978776..978976 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PCP23_RS04645 (PCP23_04640)	-	979013..979222 (-)	210	WP_003094660.1	hypothetical protein	-
PCP23_RS04650 (PCP23_04645)	-	979328..980017 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
PCP23_RS04655 (PCP23_04650)	-	980014..980484 (-)	471	WP_003094664.1	hypothetical protein	-
PCP23_RS04660 (PCP23_04655)	-	980481..980906 (-)	426	WP_003116252.1	GNAT family N-acetyltransferase	-
PCP23_RS04665 (PCP23_04660)	-	981039..981668 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
PCP23_RS04670 (PCP23_04665)	-	981665..982114 (+)	450	WP_034055507.1	MOSC domain-containing protein	-
PCP23_RS04675 (PCP23_04670)	-	982140..982310 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31843.88 Da
• Isoelectric Point: 7.7068

>NTDB_id=769247 PCP23_RS04630 WP_023084740.1 977299..978171(+) (pilD) [Pseudomonas aeruginosa strain F067]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=769247 PCP23_RS04630 WP_023084740.1 977299..978171(+) (pilD) [Pseudomonas aeruginosa strain F067]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACTTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTACCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472