Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PCP15_RS30780 | Genome accession | NZ_CP115196 |
| Coordinates | 6557755..6558627 (-) | Length | 290 a.a. |
| NCBI ID | WP_003125204.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain F076 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 6552755..6563627
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PCP15_RS30735 (PCP15_30755) | - | 6553615..6553785 (-) | 171 | WP_003094672.1 | DUF3094 family protein | - |
| PCP15_RS30740 (PCP15_30760) | - | 6553811..6554260 (-) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| PCP15_RS30745 (PCP15_30765) | - | 6554257..6554886 (-) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| PCP15_RS30750 (PCP15_30770) | - | 6555020..6555445 (+) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| PCP15_RS30755 (PCP15_30775) | - | 6555442..6555912 (+) | 471 | WP_010793791.1 | hypothetical protein | - |
| PCP15_RS30760 (PCP15_30780) | - | 6555909..6556598 (+) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| PCP15_RS30765 (PCP15_30785) | - | 6556704..6556913 (+) | 210 | WP_003094660.1 | hypothetical protein | - |
| PCP15_RS30770 (PCP15_30790) | yacG | 6556950..6557150 (-) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| PCP15_RS30775 (PCP15_30795) | coaE | 6557147..6557758 (-) | 612 | WP_010793792.1 | dephospho-CoA kinase | - |
| PCP15_RS30780 (PCP15_30800) | pilD | 6557755..6558627 (-) | 873 | WP_003125204.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| PCP15_RS30785 (PCP15_30805) | pilC | 6558631..6559851 (-) | 1221 | WP_009315898.1 | type 4a pilus biogenesis protein PilC | Machinery gene |
| PCP15_RS30790 (PCP15_30810) | - | 6559855..6560478 (-) | 624 | Protein_6090 | ATPase, T2SS/T4P/T4SS family | - |
| PCP15_RS30795 (PCP15_30815) | - | 6560386..6562638 (+) | 2253 | WP_419197924.1 | DUF1631 domain-containing protein | - |
| PCP15_RS30800 (PCP15_30820) | ampD | 6562789..6563355 (+) | 567 | WP_003116245.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31839.89 Da Isoelectric Point: 7.7068
>NTDB_id=768971 PCP15_RS30780 WP_003125204.1 6557755..6558627(-) (pilD) [Pseudomonas aeruginosa strain F076]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=768971 PCP15_RS30780 WP_003125204.1 6557755..6558627(-) (pilD) [Pseudomonas aeruginosa strain F076]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATACTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTACCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATACTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTACCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.714 |
96.552 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.281 |
95.862 |
0.472 |