Detailed information NTG0768913

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PCP84_RS07960
• Genome accession: NZ_CP115193
• Coordinates: 1680803..1681675 (+)
• Length: 290 a.a.
• NCBI ID: WP_174216249.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain F077
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1675803..1686675

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP84_RS07945 (PCP84_07940)	-	1677186..1677650 (-)	465	WP_134236867.1	pilin	-
PCP84_RS07950 (PCP84_07945)	pilB	1677881..1679581 (+)	1701	WP_003107297.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PCP84_RS07955 (PCP84_07950)	pilC	1679585..1680802 (+)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
PCP84_RS07960 (PCP84_07955)	pilD	1680803..1681675 (+)	873	WP_174216249.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PCP84_RS07965 (PCP84_07960)	coaE	1681672..1682283 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
PCP84_RS07970 (PCP84_07965)	yacG	1682280..1682480 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PCP84_RS07975 (PCP84_07970)	-	1682517..1682726 (-)	210	WP_003094660.1	hypothetical protein	-
PCP84_RS07980 (PCP84_07975)	-	1682832..1683521 (-)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
PCP84_RS07985 (PCP84_07980)	-	1683518..1683988 (-)	471	WP_003094664.1	hypothetical protein	-
PCP84_RS07990 (PCP84_07985)	-	1683985..1684410 (-)	426	WP_003116252.1	GNAT family N-acetyltransferase	-
PCP84_RS07995 (PCP84_07990)	-	1684543..1685172 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
PCP84_RS08000 (PCP84_07995)	-	1685169..1685618 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
PCP84_RS08005 (PCP84_08000)	-	1685644..1685814 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31770.82 Da
• Isoelectric Point: 7.7068

>NTDB_id=768913 PCP84_RS07960 WP_174216249.1 1680803..1681675(+) (pilD) [Pseudomonas aeruginosa strain F077]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PLENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=768913 PCP84_RS07960 WP_174216249.1 1680803..1681675(+) (pilD) [Pseudomonas aeruginosa strain F077]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCAACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTTGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.451	94.138	0.466