Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   O8413_RS16890 Genome accession   NZ_CP115189
Coordinates   336550..338601 (-) Length   683 a.a.
NCBI ID   WP_283513827.1    Uniprot ID   -
Organism   Vibrio furnissii strain MT14     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 331550..343601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O8413_RS16875 (O8413_16875) clcA 332488..333885 (+) 1398 WP_004728183.1 H(+)/Cl(-) exchange transporter ClcA -
  O8413_RS16880 (O8413_16880) - 334046..335005 (+) 960 WP_004728184.1 TDT family transporter -
  O8413_RS16885 (O8413_16885) cqsA 335223..336404 (+) 1182 WP_283513826.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  O8413_RS16890 (O8413_16890) cqsS 336550..338601 (-) 2052 WP_283513827.1 hybrid sensor histidine kinase/response regulator Regulator
  O8413_RS16895 (O8413_16895) - 338741..341782 (-) 3042 WP_283513828.1 SMC family ATPase -
  O8413_RS16900 (O8413_16900) - 341786..342928 (-) 1143 WP_283513829.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 683 a.a.        Molecular weight: 78742.56 Da        Isoelectric Point: 6.1347

>NTDB_id=768832 O8413_RS16890 WP_283513827.1 336550..338601(-) (cqsS) [Vibrio furnissii strain MT14]
MEVVKKIYQYAEPNLTLVGWMGFIGFPFYYYVWAHVFPQPYESLLLRGFCSCLFGGIVFRNAVPKLWQRYLPYYYLFMIG
FCLPFFFAYMMLMNDWSTVWAMSFMASIFLHILLVHETKVMLAQAALSVAAAYGAVYWLQHYEPQHVILWPYVPIFLFTY
VFGNLFYFRNQSSHESKVSIAKSFGAGIAHEMRNPLSALKSSVDVLRSILPAQPANPTQGAYIDGQDLTLLHEILGNADE
VIHTGNETIDLLLTSIDENRVSTSTFKRLSAKEVVDHALHSFSYKRALDRQAVTLNAINDFDYFGSETLLKFALYNLLKN
AFYYQNSEHFHIEVTLITRGQENLIIVRDNGVGIAPDRLDDIFKDFYTFGKNGSYGLGLPFCRKVMKSFGGNIRCASVLG
EWTEFTLSFPQYHSERVSHIKLDLMKNKSVLYVGTQGLMSRHLSEKAFYQGFRLHHATLSEALTREEYEFEYDIILLDLE
QIGDQWQSLVELETKLHFTEAKIVYLYDKQRAYPINIERHLRVVPLEIRQLLLDTDKELDRLLFEVDDVAPDHNVVPIKQ
PKYERRILVVDDNQSLRTFTALLLEKQGYEVVQANDGQQALDAMEHNEFDLILMDIEMPIIDGIEATRVIRDSNKPYCHI
PIVGHTGDNSPLTIEKIHQSGMNDYIVKPADKDKLLGKLANWI

Nucleotide


Download         Length: 2052 bp        

>NTDB_id=768832 O8413_RS16890 WP_283513827.1 336550..338601(-) (cqsS) [Vibrio furnissii strain MT14]
ATGGAAGTCGTAAAGAAAATATACCAATATGCTGAACCGAACCTCACGTTAGTGGGGTGGATGGGGTTTATTGGTTTTCC
GTTTTACTACTATGTGTGGGCGCATGTGTTTCCGCAGCCCTATGAATCACTGCTGCTGCGCGGTTTCTGTTCGTGCCTGT
TTGGCGGCATTGTGTTTCGAAACGCGGTGCCGAAGTTGTGGCAGCGCTACTTACCTTACTATTACCTGTTTATGATCGGT
TTCTGTTTGCCGTTCTTCTTTGCCTACATGATGCTGATGAACGATTGGTCCACGGTGTGGGCGATGTCATTCATGGCGTC
CATCTTCCTACATATTCTGCTAGTTCATGAGACCAAAGTGATGCTGGCGCAAGCTGCGTTATCCGTCGCGGCGGCGTATG
GCGCCGTGTATTGGTTGCAACATTACGAACCACAGCATGTCATTTTGTGGCCTTATGTGCCGATTTTCCTGTTCACTTAC
GTGTTCGGGAATCTGTTTTATTTCAGAAACCAAAGCTCGCATGAATCGAAGGTGTCGATTGCGAAATCCTTTGGCGCCGG
GATTGCACATGAAATGCGTAACCCGCTTAGTGCGTTGAAATCGTCGGTTGATGTGCTGCGTTCGATTTTGCCCGCACAGC
CGGCCAATCCAACCCAAGGTGCATACATCGACGGACAGGATCTGACTTTGCTGCATGAAATTTTGGGCAACGCTGACGAA
GTGATCCACACCGGGAACGAAACCATCGACCTGTTACTGACATCTATCGATGAAAACCGCGTCTCGACCTCAACATTCAA
GCGTTTGTCGGCCAAAGAGGTGGTTGACCATGCCCTGCATTCCTTCTCGTATAAACGCGCGTTGGATCGTCAGGCCGTCA
CGCTCAATGCCATCAACGATTTTGACTATTTCGGCAGTGAAACCCTGCTGAAATTTGCCCTCTACAACTTATTGAAAAAT
GCCTTTTATTATCAGAACAGTGAACATTTTCATATCGAAGTGACGCTCATCACTCGGGGTCAAGAAAACCTCATCATCGT
GCGAGATAACGGCGTGGGCATCGCCCCAGACCGCTTGGATGACATCTTTAAGGACTTCTATACCTTTGGCAAAAATGGCA
GTTATGGTTTGGGTTTGCCGTTTTGTCGCAAGGTGATGAAGTCGTTCGGCGGCAACATCCGTTGTGCCTCCGTGCTGGGG
GAATGGACGGAGTTCACGTTAAGTTTTCCTCAATATCACTCTGAACGCGTCTCACACATCAAACTGGATTTAATGAAAAA
TAAATCGGTGTTGTATGTTGGTACGCAAGGGCTGATGAGCCGACATCTGAGCGAGAAAGCGTTTTACCAAGGATTTCGCC
TACATCACGCAACGCTGAGCGAGGCGTTAACGCGTGAAGAGTACGAGTTTGAATACGATATTATTCTGCTGGATTTAGAG
CAGATCGGTGATCAGTGGCAGTCATTGGTCGAACTAGAAACCAAGCTGCATTTTACCGAAGCCAAAATTGTTTACCTTTA
CGACAAGCAACGCGCATACCCCATCAATATTGAGCGCCATTTGCGGGTGGTGCCTTTAGAAATTCGTCAACTGCTGCTCG
ATACCGACAAAGAACTCGATCGACTGCTGTTTGAGGTGGATGACGTTGCGCCTGATCACAATGTTGTGCCGATCAAACAA
CCGAAATATGAACGCCGTATTCTGGTGGTGGATGACAACCAATCCCTGCGCACATTCACGGCGTTGCTGCTTGAAAAGCA
GGGCTATGAAGTGGTGCAGGCCAATGATGGTCAACAGGCGTTGGATGCAATGGAGCACAACGAGTTCGACCTGATTTTGA
TGGACATTGAAATGCCGATCATTGATGGCATTGAAGCGACGCGCGTGATTCGGGATTCCAACAAGCCGTACTGCCACATT
CCGATTGTTGGCCACACTGGGGATAATAGCCCGCTGACGATTGAGAAAATTCACCAATCTGGCATGAACGATTACATCGT
TAAACCGGCCGATAAAGACAAGCTGCTGGGGAAACTGGCCAATTGGATCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(567-679)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(307-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

59.211

100

0.593