Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   O8413_RS16885 Genome accession   NZ_CP115189
Coordinates   335223..336404 (+) Length   393 a.a.
NCBI ID   WP_283513826.1    Uniprot ID   -
Organism   Vibrio furnissii strain MT14     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 330223..341404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O8413_RS16870 (O8413_16870) - 331022..332017 (-) 996 WP_283513825.1 GTP-binding protein -
  O8413_RS16875 (O8413_16875) clcA 332488..333885 (+) 1398 WP_004728183.1 H(+)/Cl(-) exchange transporter ClcA -
  O8413_RS16880 (O8413_16880) - 334046..335005 (+) 960 WP_004728184.1 TDT family transporter -
  O8413_RS16885 (O8413_16885) cqsA 335223..336404 (+) 1182 WP_283513826.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  O8413_RS16890 (O8413_16890) cqsS 336550..338601 (-) 2052 WP_283513827.1 hybrid sensor histidine kinase/response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43562.44 Da        Isoelectric Point: 6.7722

>NTDB_id=768831 O8413_RS16885 WP_283513826.1 335223..336404(+) (cqsA) [Vibrio furnissii strain MT14]
MKSDAKNNRLPDSIQDRLNFFVRDLIESNQNGKHLVLGKRPSQGDIVLQSNDYLSLANHPLIKARLKQAIDTTHDSVFMS
AIFLQDDETKPSLEHQLAEFVNFDSCLLSQSGWNANTSLLQTVCAPGSNVYIDFFAHMSMWEGARYANANIHPFMHNNCD
HLRKQIQRHGPGLIVVDSIYSTIGTLAPLTELVHIAKETQCAILVDESHSLGTHGDNGAGLLAELGLSDQVDFMTASLAK
TFAYRAGVIWANNNANQCIPFVGYPAIFSSTILPYEIAALEATLEVIKSANDRRKNLFHNAQLLSQGLNKIGIHIRSQSQ
IIALETGDERNTEKVRDYLEDNGVFGAVFCRPATSKTKNIIRLSLTSAVTEQQIDRILSVCHSAVKRGDMIFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=768831 O8413_RS16885 WP_283513826.1 335223..336404(+) (cqsA) [Vibrio furnissii strain MT14]
ATGAAATCTGATGCCAAAAATAATCGGTTACCTGACTCGATTCAGGACCGTTTGAATTTCTTCGTTCGCGATTTAATTGA
AAGCAATCAAAACGGTAAACATCTGGTATTAGGAAAGCGCCCCTCCCAAGGTGATATTGTTTTACAAAGTAACGATTACC
TCAGCCTTGCCAACCATCCATTGATCAAGGCGCGTTTAAAACAGGCCATTGATACCACGCACGACAGTGTGTTTATGTCG
GCCATTTTCTTACAAGATGATGAAACCAAACCTAGCCTAGAGCACCAACTGGCTGAGTTTGTCAATTTCGACTCATGCCT
GTTGTCTCAATCCGGTTGGAATGCCAATACGTCGCTACTGCAGACCGTTTGCGCACCGGGCAGCAATGTCTATATCGATT
TCTTTGCGCATATGTCGATGTGGGAAGGTGCACGTTATGCCAATGCGAACATTCATCCGTTCATGCATAACAATTGTGAC
CATTTGCGCAAACAGATCCAACGTCATGGCCCTGGGCTCATTGTGGTCGATTCCATCTACAGCACCATTGGTACGCTTGC
GCCGCTGACTGAATTGGTTCATATCGCCAAAGAGACTCAGTGCGCCATATTGGTCGATGAATCGCATTCACTTGGCACCC
ATGGCGATAACGGCGCTGGCTTACTGGCGGAATTGGGGCTCTCCGATCAGGTCGATTTTATGACCGCGAGTTTGGCAAAA
ACATTTGCGTATCGTGCGGGGGTTATTTGGGCAAATAACAACGCGAATCAATGTATTCCTTTTGTGGGCTATCCGGCGAT
ATTCAGCTCGACGATATTACCGTATGAAATAGCCGCATTAGAAGCCACATTAGAGGTCATTAAATCGGCCAACGATCGTC
GCAAGAATTTATTTCACAATGCACAACTATTATCACAAGGATTAAATAAAATTGGTATTCACATTCGTAGCCAATCCCAA
ATTATCGCATTGGAAACAGGCGATGAAAGAAATACAGAAAAAGTCCGTGATTATTTAGAAGACAATGGCGTTTTCGGCGC
CGTATTTTGTCGACCGGCCACCTCGAAAACGAAAAATATTATTCGCTTGTCGTTAACCAGTGCCGTCACGGAACAACAGA
TCGACCGCATTTTGTCGGTGTGTCACAGCGCGGTAAAACGGGGGGATATGATCTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

68.831

97.964

0.674