Detailed information NTG0768825

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: O8413_RS13670
• Genome accession: NZ_CP115188
• Coordinates: 2925067..2926056 (+)
• Length: 329 a.a.
• NCBI ID: WP_283512682.1
• Uniprot ID: -
• Organism: Vibrio furnissii strain MT14
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2920067..2931056

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O8413_RS13635 (O8413_13635)	ftsB	2920082..2920366 (+)	285	WP_004723824.1	cell division protein FtsB	-
O8413_RS13640 (O8413_13640)	ispD	2920363..2921076 (+)	714	WP_004723825.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
O8413_RS13645 (O8413_13645)	ispF	2921126..2921602 (+)	477	WP_004723827.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
O8413_RS13650 (O8413_13650)	truD	2921634..2922680 (+)	1047	WP_283512680.1	tRNA pseudouridine(13) synthase TruD	-
O8413_RS13655 (O8413_13655)	surE	2922673..2923440 (+)	768	WP_004723832.1	5'/3'-nucleotidase SurE	-
O8413_RS13660 (O8413_13660)	-	2923433..2924059 (+)	627	WP_014205779.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
O8413_RS13665 (O8413_13665)	nlpD	2924059..2924994 (+)	936	WP_283512681.1	murein hydrolase activator NlpD	-
O8413_RS13670 (O8413_13670)	rpoS	2925067..2926056 (+)	990	WP_283512682.1	RNA polymerase sigma factor RpoS	Regulator
O8413_RS13675 (O8413_13675)	mutS	2926125..2928686 (-)	2562	WP_004723840.1	DNA mismatch repair protein MutS	-
O8413_RS13680 (O8413_13680)	pncC	2928771..2929265 (+)	495	WP_283512683.1	nicotinamide-nucleotide amidase	-
O8413_RS13685 (O8413_13685)	recA	2929432..2930484 (+)	1053	WP_004723845.1	recombinase RecA	Machinery gene
O8413_RS13690 (O8413_13690)	recX	2930579..2931049 (+)	471	WP_004723847.1	recombination regulator RecX	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37771.46 Da
• Isoelectric Point: 4.4379

>NTDB_id=768825 O8413_RS13670 WP_283512682.1 2925067..2926056(+) (rpoS) [Vibrio furnissii strain MT14]
MSISNTATKVEEFEFDSEAVNNTATDQELTTNDNDQSEEVREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNS
DPEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNM
ESLFNVEND

Nucleotide

• Length: 990 bp

>NTDB_id=768825 O8413_RS13670 WP_283512682.1 2925067..2926056(+) (rpoS) [Vibrio furnissii strain MT14]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGAGTTCGATTCAGAAGCCGTGAATAACACGGCGACCGACCA
AGAACTGACTACCAACGATAATGACCAATCTGAAGAGGTTCGTGAAGAGTTTGATGCTTCCACGAAAAGCCTTGATGCCA
CTCAGATGTATCTGAGCGAGATTGGTTTCTCACCCTTATTAACCGCCGAAGAAGAAGTGCTCTATGCTCGCCGCGCCTTG
CGTGGTGATGAGGCTGCGCGCAAACGCATGATCGAGAGCAACTTACGTCTGGTGGTCAAAATCTCTCGCCGTTATAGCAA
TCGGGGCTTGGCACTGCTTGACCTGATTGAAGAGGGCAACCTTGGCCTCATTCGTGCAGTAGAGAAATTCGACCCAGAAC
GCGGTTTCCGTTTTTCGACTTATGCTACCTGGTGGATTCGTCAGACCATTGAACGTGCCCTGATGAACCAGACTCGTACG
ATTCGTTTACCGATTCATGTGGTGAAAGAGCTGAACATCTACTTGCGTACTGCGCGTGAGCTGTCTCAGAAACTCGACCA
CGAACCGACCGCGGAAGAAATTGCCGTGGAACTGGATAAGCCAGTGGATGATGTCAGCAAAATGCTCCGTCTGAACGAGC
GCATTAGCTCCGTCGATACGCCAATTGGCGGCGATGGTGACAAAGCATTGCTCGATATCATTCCTGATATCAACAATTCC
GACCCTGAAGTCTCCACACAGGATGACGATATTCGTGATTCGCTGGTGGCTTGGCTCGATGAGCTCAATCCGAAACAGAA
AGAAGTGCTGGCACGCCGTTTTGGCTTGTTAGGGTATGAACCATCAACACTGGAAGAAGTGGGCCGCGAGATCAATTTGA
CCCGTGAACGTGTGCGTCAAATTCAGGTGGAAGGCTTGCGCCGACTAAGAGAAATCCTGATGAAACAGGGTTTGAACATG
GAATCGCTGTTTAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (170-243)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	88.024	100	0.894