Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   O8413_RS08905 Genome accession   NZ_CP115188
Coordinates   1932666..1933283 (+) Length   205 a.a.
NCBI ID   WP_014204466.1    Uniprot ID   A0A0Q2MAY4
Organism   Vibrio furnissii strain MT14     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 1927666..1938283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O8413_RS08880 (O8413_08880) panC 1928110..1928991 (+) 882 WP_004729048.1 pantoate--beta-alanine ligase -
  O8413_RS08885 (O8413_08885) - 1929066..1929836 (-) 771 WP_004729049.1 ABC transporter permease -
  O8413_RS08890 (O8413_08890) - 1929842..1930759 (-) 918 WP_283512445.1 ABC transporter ATP-binding protein -
  O8413_RS08895 (O8413_08895) can 1931102..1931770 (+) 669 WP_004729053.1 carbonate dehydratase -
  O8413_RS08900 (O8413_08900) hpt 1931818..1932345 (-) 528 WP_004729056.1 hypoxanthine phosphoribosyltransferase -
  O8413_RS08905 (O8413_08905) opaR 1932666..1933283 (+) 618 WP_014204466.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  O8413_RS08910 (O8413_08910) lpdA 1933402..1934829 (-) 1428 WP_154180383.1 dihydrolipoyl dehydrogenase -
  O8413_RS08915 (O8413_08915) aceF 1935102..1936991 (-) 1890 WP_283512446.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23851.20 Da        Isoelectric Point: 6.2312

>NTDB_id=768802 O8413_RS08905 WP_014204466.1 1932666..1933283(+) (opaR) [Vibrio furnissii strain MT14]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFANRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTYVVRQFSNFL
TDNIDLDMHAKDNIANITREMVRLANDDCHWLKVWFEWSASTRDEVWPLFVSSNRTNQLLLKNMFSKAIERGEVCEQHDA
DDLATLFHGVCYSLFVQANRVRDEGYMQKLVKSYLDMLCIYKRDH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=768802 O8413_RS08905 WP_014204466.1 1932666..1933283(+) (opaR) [Vibrio furnissii strain MT14]
ATGGACGCATCGATAGAGAAACGCCCTAGAACGCGGCTATCTCCCCAAAAACGTAAACTTCAGTTGATGGAAATCGCGCT
GGAAGTGTTTGCAAATCGTGGGATTGGTCGTGGCGGTCACGCCGACATCGCAGAAATTGCTCAAGTTTCTGTCGCGACCG
TATTCAACTATTTCCCAACGCGCGAAGATTTGGTCGACGACGTGCTCACTTACGTGGTTCGTCAGTTCTCCAACTTCCTG
ACCGACAACATCGATCTGGACATGCACGCAAAAGACAACATTGCGAACATCACCCGCGAAATGGTTCGTTTGGCCAATGA
CGATTGCCACTGGCTGAAAGTGTGGTTTGAGTGGAGCGCATCCACCCGTGATGAAGTGTGGCCCCTGTTTGTGTCGAGCA
ACCGCACCAACCAACTGCTGCTGAAAAACATGTTCTCAAAAGCGATTGAACGAGGTGAAGTATGCGAGCAGCACGATGCC
GATGATCTGGCGACGCTGTTCCATGGCGTGTGCTACTCCCTGTTCGTGCAAGCAAACCGTGTACGCGATGAAGGCTACAT
GCAGAAGCTGGTGAAGAGCTACCTCGACATGCTGTGCATCTATAAACGCGATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2MAY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

80.198

98.537

0.79
  hapR Vibrio cholerae C6706

77.723

98.537

0.766
  hapR Vibrio cholerae strain A1552

77.723

98.537

0.766