Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ORQ91_RS11155 Genome accession   NZ_CP115172
Coordinates   2184571..2185473 (-) Length   300 a.a.
NCBI ID   WP_073205168.1    Uniprot ID   -
Organism   Bacillus safensis strain BS-10L     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2179571..2190473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORQ91_RS11140 (ORQ91_02229) xerC 2179948..2180865 (-) 918 WP_122631396.1 tyrosine recombinase XerC -
  ORQ91_RS11145 (ORQ91_02230) trmFO 2180928..2182232 (-) 1305 WP_073205170.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ORQ91_RS11150 (ORQ91_02231) topA 2182303..2184378 (-) 2076 WP_044330667.1 type I DNA topoisomerase -
  ORQ91_RS11155 (ORQ91_02232) dprA 2184571..2185473 (-) 903 WP_073205168.1 DNA-processing protein DprA Machinery gene
  ORQ91_RS11160 (ORQ91_02233) sucD 2185537..2186439 (-) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  ORQ91_RS11165 (ORQ91_02234) sucC 2186462..2187622 (-) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  ORQ91_RS11170 (ORQ91_02235) - 2187799..2188074 (-) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  ORQ91_RS11175 (ORQ91_02236) - 2188071..2189810 (-) 1740 WP_122631399.1 glycosyltransferase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34044.36 Da        Isoelectric Point: 8.8768

>NTDB_id=768558 ORQ91_RS11155 WP_073205168.1 2184571..2185473(-) (dprA) [Bacillus safensis strain BS-10L]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDFTRLKQAEENEFPMFQHIVQAYLKQNVHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRVPSSYGDACVKKIVGELVKEEWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHVYPKEHAQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSTGPARLIQQGAKLVHSTKDILEEFSFHSVQYTEPS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=768558 ORQ91_RS11155 WP_073205168.1 2184571..2185473(-) (dprA) [Bacillus safensis strain BS-10L]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATGTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACGTTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACAAGAGTTCCATCATCTTATGGAGATGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTCAAGGAAGAGTGGATGATTGTCAGTGGTTTAGCTAAAGGAATCGATGGACTTGCACAT
AAAGAGTGCATCAGGAAAAAAGGAAAAACGATCGGCATTATAGCAGGCGGCTTTCAGCATGTATACCCAAAAGAACATGC
ACAAATGGCTCAATACATGGGCGAACATCATTTGCTTTTGTCAGAGCATCCGCCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCATTGACGAAAGGAACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCGCTTGAGCAAGGCAAAGAAGTATTTGCGGTTGCCGGATCCATCTTTGATTCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGGGCAAAGCTTGTTCATTCCACAAAGGATATTTTAGAGGAATTCTCCTTCCACAGCG
TTCAATATACTGAACCCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.167

96

0.52
  dprA Legionella pneumophila strain ERS1305867

37.705

100

0.383
  dprA Lactococcus lactis subsp. cremoris KW2

38.062

96.333

0.367