Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ORQ91_RS07690 Genome accession   NZ_CP115172
Coordinates   1512045..1512380 (-) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus safensis strain BS-10L     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1507045..1517380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORQ91_RS07640 (ORQ91_01532) comGC 1507254..1507547 (+) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene
  ORQ91_RS07645 (ORQ91_01533) comGD 1507540..1507986 (+) 447 WP_133744198.1 competence type IV pilus minor pilin ComGD -
  ORQ91_RS07650 (ORQ91_01534) comGE 1507970..1508284 (+) 315 WP_270127803.1 competence type IV pilus minor pilin ComGE -
  ORQ91_RS07655 (ORQ91_01535) comGF 1508271..1508723 (+) 453 WP_270127805.1 competence type IV pilus minor pilin ComGF -
  ORQ91_RS07660 (ORQ91_01536) - 1508720..1509103 (+) 384 WP_133744195.1 competence type IV pilus minor pilin ComGG -
  ORQ91_RS07665 (ORQ91_01537) - 1509163..1509357 (+) 195 WP_024422974.1 YqzE family protein -
  ORQ91_RS07670 (ORQ91_01538) - 1509392..1509670 (-) 279 WP_171464609.1 DUF3889 domain-containing protein -
  ORQ91_RS07675 (ORQ91_01539) tapA 1509970..1510497 (+) 528 WP_103131952.1 amyloid fiber anchoring/assembly protein TapA -
  ORQ91_RS07680 (ORQ91_01540) sipW 1510550..1511122 (+) 573 WP_024422971.1 signal peptidase I SipW -
  ORQ91_RS07685 (ORQ91_01541) tasA 1511177..1511977 (+) 801 WP_024422970.1 biofilm matrix protein TasA -
  ORQ91_RS07690 (ORQ91_01542) sinR 1512045..1512380 (-) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  ORQ91_RS07695 (ORQ91_01543) - 1512414..1512578 (-) 165 WP_270127811.1 anti-repressor SinI family protein -
  ORQ91_RS07700 (ORQ91_01544) - 1512760..1513557 (-) 798 WP_198456924.1 YqhG family protein -
  ORQ91_RS07705 (ORQ91_01545) - 1513572..1515242 (-) 1671 WP_133744192.1 DEAD/DEAH box helicase -
  ORQ91_RS07710 (ORQ91_01546) gcvT 1515803..1516900 (+) 1098 WP_024427995.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=768550 ORQ91_RS07690 WP_024422969.1 1512045..1512380(-) (sinR) [Bacillus safensis strain BS-10L]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=768550 ORQ91_RS07690 WP_024422969.1 1512045..1512380(-) (sinR) [Bacillus safensis strain BS-10L]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946