Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   O7R04_RS16160 Genome accession   NZ_CP115158
Coordinates   3292762..3293451 (-) Length   229 a.a.
NCBI ID   WP_198317760.1    Uniprot ID   -
Organism   Bacillus velezensis strain MBLB 0692     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3287762..3298451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O7R04_RS16125 (O7R04_16125) fliW 3287853..3288284 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  O7R04_RS16130 (O7R04_16130) - 3288314..3288883 (-) 570 WP_024085861.1 DUF6470 family protein -
  O7R04_RS16135 (O7R04_16135) flgL 3288974..3289891 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  O7R04_RS16140 (O7R04_16140) flgK 3289903..3291420 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  O7R04_RS16145 (O7R04_16145) - 3291436..3291918 (-) 483 WP_003151394.1 flagellar protein FlgN -
  O7R04_RS16150 (O7R04_16150) flgM 3291933..3292199 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  O7R04_RS16155 (O7R04_16155) - 3292269..3292688 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  O7R04_RS16160 (O7R04_16160) comFC 3292762..3293451 (-) 690 WP_198317760.1 phosphoribosyltransferase family protein Machinery gene
  O7R04_RS16165 (O7R04_16165) - 3293457..3293741 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  O7R04_RS16170 (O7R04_16170) comFA 3293799..3295184 (-) 1386 WP_095318332.1 DEAD/DEAH box helicase Machinery gene
  O7R04_RS16175 (O7R04_16175) - 3295292..3296140 (-) 849 WP_003151387.1 DegV family protein -
  O7R04_RS16180 (O7R04_16180) degU 3296238..3296927 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  O7R04_RS16185 (O7R04_16185) degS 3297004..3298167 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25262.97 Da        Isoelectric Point: 8.2933

>NTDB_id=768447 O7R04_RS16160 WP_198317760.1 3292762..3293451(-) (comFC) [Bacillus velezensis strain MBLB 0692]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEMRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=768447 O7R04_RS16160 WP_198317760.1 3292762..3293451(-) (comFC) [Bacillus velezensis strain MBLB 0692]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAATGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGCGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603