Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   O7R04_RS16170 Genome accession   NZ_CP115158
Coordinates   3293799..3295184 (-) Length   461 a.a.
NCBI ID   WP_095318332.1    Uniprot ID   -
Organism   Bacillus velezensis strain MBLB 0692     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3288799..3300184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O7R04_RS16135 (O7R04_16135) flgL 3288974..3289891 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  O7R04_RS16140 (O7R04_16140) flgK 3289903..3291420 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  O7R04_RS16145 (O7R04_16145) - 3291436..3291918 (-) 483 WP_003151394.1 flagellar protein FlgN -
  O7R04_RS16150 (O7R04_16150) flgM 3291933..3292199 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  O7R04_RS16155 (O7R04_16155) - 3292269..3292688 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  O7R04_RS16160 (O7R04_16160) comFC 3292762..3293451 (-) 690 WP_198317760.1 phosphoribosyltransferase family protein Machinery gene
  O7R04_RS16165 (O7R04_16165) - 3293457..3293741 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  O7R04_RS16170 (O7R04_16170) comFA 3293799..3295184 (-) 1386 WP_095318332.1 DEAD/DEAH box helicase Machinery gene
  O7R04_RS16175 (O7R04_16175) - 3295292..3296140 (-) 849 WP_003151387.1 DegV family protein -
  O7R04_RS16180 (O7R04_16180) degU 3296238..3296927 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  O7R04_RS16185 (O7R04_16185) degS 3297004..3298167 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  O7R04_RS16190 (O7R04_16190) - 3298390..3299037 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52472.88 Da        Isoelectric Point: 10.1928

>NTDB_id=768448 O7R04_RS16170 WP_095318332.1 3293799..3295184(-) (comFA) [Bacillus velezensis strain MBLB 0692]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWGPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALIYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=768448 O7R04_RS16170 WP_095318332.1 3293799..3295184(-) (comFA) [Bacillus velezensis strain MBLB 0692]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAGAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGGGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTATTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTGCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.826

99.783

0.627