Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   O7R04_RS11380 Genome accession   NZ_CP115158
Coordinates   2374442..2375479 (-) Length   345 a.a.
NCBI ID   WP_043867286.1    Uniprot ID   -
Organism   Bacillus velezensis strain MBLB 0692     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2369442..2380479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O7R04_RS11330 (O7R04_11330) tasA 2369677..2370462 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  O7R04_RS11335 (O7R04_11335) sipW 2370526..2371110 (-) 585 WP_012117977.1 signal peptidase I SipW -
  O7R04_RS11340 (O7R04_11340) tapA 2371082..2371753 (-) 672 WP_003153099.1 amyloid fiber anchoring/assembly protein TapA -
  O7R04_RS11345 (O7R04_11345) - 2372012..2372341 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  O7R04_RS11350 (O7R04_11350) - 2372381..2372560 (-) 180 WP_003153093.1 YqzE family protein -
  O7R04_RS11355 (O7R04_11355) comGG 2372617..2372994 (-) 378 WP_015388005.1 competence type IV pilus minor pilin ComGG Machinery gene
  O7R04_RS11360 (O7R04_11360) comGF 2372995..2373390 (-) 396 WP_015388004.1 competence type IV pilus minor pilin ComGF -
  O7R04_RS11365 (O7R04_11365) comGE 2373404..2373718 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  O7R04_RS11370 (O7R04_11370) comGD 2373702..2374139 (-) 438 WP_043867285.1 competence type IV pilus minor pilin ComGD Machinery gene
  O7R04_RS11375 (O7R04_11375) comGC 2374129..2374437 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  O7R04_RS11380 (O7R04_11380) comGB 2374442..2375479 (-) 1038 WP_043867286.1 competence type IV pilus assembly protein ComGB Machinery gene
  O7R04_RS11385 (O7R04_11385) comGA 2375466..2376536 (-) 1071 WP_043867287.1 competence type IV pilus ATPase ComGA Machinery gene
  O7R04_RS11390 (O7R04_11390) - 2376734..2377684 (-) 951 WP_003153082.1 magnesium transporter CorA family protein -
  O7R04_RS11395 (O7R04_11395) - 2377830..2379131 (+) 1302 WP_043867288.1 hemolysin family protein -
  O7R04_RS11400 (O7R04_11400) - 2379169..2379999 (-) 831 WP_032856863.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39575.88 Da        Isoelectric Point: 9.4699

>NTDB_id=768429 O7R04_RS11380 WP_043867286.1 2374442..2375479(-) (comGB) [Bacillus velezensis strain MBLB 0692]
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKLQLAELTDGIRRLREGDAFYEVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLISSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPYYEKDLAAAVSHGQANGLLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=768429 O7R04_RS11380 WP_043867286.1 2374442..2375479(-) (comGB) [Bacillus velezensis strain MBLB 0692]
ATGAAGCGGATTAAACGAACCTGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTGATTGAAGGGCTCAGACTGCTGAAACTCCAGCTGCATAAACTTCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGGCTGAGGGAAGGTGATGCGTTTTACGAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCTATCTGCTAT
TTCGCAGAGAAACACGGAGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTATTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATTTCTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TTATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACATCCGGTGCGACTGCTTTCATCTTTGCATTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTCATTGTTGTGAAAATACCCCTCTTGGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTATTATGAAAAAGATCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCTGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)

Type II secretion system (T2SS), protein F (T2SSF)

(16-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

65.325

93.623

0.612