Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   O7R04_RS01800 Genome accession   NZ_CP115158
Coordinates   323348..323785 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain MBLB 0692     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 318348..328785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O7R04_RS01765 (O7R04_01765) - 318928..319053 (-) 126 Protein_302 hypothetical protein -
  O7R04_RS01770 (O7R04_01770) - 319206..320408 (+) 1203 WP_015388720.1 GTP-binding protein -
  O7R04_RS01775 (O7R04_01775) - 320473..321609 (+) 1137 WP_088037494.1 zinc-dependent alcohol dehydrogenase -
  O7R04_RS01780 (O7R04_01780) - 321624..322058 (+) 435 WP_021494203.1 RDD family protein -
  O7R04_RS01785 (O7R04_01785) - 322130..322450 (+) 321 WP_139885554.1 YckD family protein -
  O7R04_RS18905 - 322554..322637 (+) 84 WP_223151977.1 family 1 glycosylhydrolase -
  O7R04_RS01790 (O7R04_01790) - 322669..322887 (+) 219 Protein_308 family 1 glycosylhydrolase -
  O7R04_RS01795 (O7R04_01795) nin/comJ 322928..323326 (-) 399 WP_003156589.1 competence protein ComJ Regulator
  O7R04_RS01800 (O7R04_01800) nucA/comI 323348..323785 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  O7R04_RS01805 (O7R04_01805) hxlB 324144..324701 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  O7R04_RS01810 (O7R04_01810) hxlA 324698..325333 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  O7R04_RS01815 (O7R04_01815) - 325565..325927 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=768391 O7R04_RS01800 WP_003156588.1 323348..323785(-) (nucA/comI) [Bacillus velezensis strain MBLB 0692]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=768391 O7R04_RS01800 WP_003156588.1 323348..323785(-) (nucA/comI) [Bacillus velezensis strain MBLB 0692]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641