Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   QPX65_RS00690 Genome accession   NZ_CP126698
Coordinates   149127..151208 (-) Length   693 a.a.
NCBI ID   WP_224635196.1    Uniprot ID   -
Organism   Vibrio vulnificus strain VV2018     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 144127..156208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX65_RS00670 (QPX65_00670) - 144580..144732 (+) 153 WP_206638582.1 hypothetical protein -
  QPX65_RS00675 (QPX65_00675) ompR 145278..145997 (+) 720 WP_011078925.1 two-component system response regulator OmpR -
  QPX65_RS00680 (QPX65_00680) envZ 146090..147388 (+) 1299 WP_011149224.1 two-component system sensor histidine kinase EnvZ -
  QPX65_RS00685 (QPX65_00685) - 147465..148871 (-) 1407 WP_188011343.1 uracil-xanthine permease family protein -
  QPX65_RS00690 (QPX65_00690) recG 149127..151208 (-) 2082 WP_224635196.1 ATP-dependent DNA helicase RecG Machinery gene
  QPX65_RS00695 (QPX65_00695) trmH 151352..152038 (-) 687 WP_188011345.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  QPX65_RS00700 (QPX65_00700) spoT 152127..154247 (-) 2121 WP_011078920.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  QPX65_RS00705 (QPX65_00705) rpoZ 154282..154554 (-) 273 WP_017420484.1 DNA-directed RNA polymerase subunit omega -
  QPX65_RS00710 (QPX65_00710) gmk 154682..155305 (-) 624 WP_011078918.1 guanylate kinase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76817.93 Da        Isoelectric Point: 7.5952

>NTDB_id=768390 QPX65_RS00690 WP_224635196.1 149127..151208(-) (recG) [Vibrio vulnificus strain VV2018]
MSAQLLSAVPLTSLSGVGAKVAEKLEKIGLSSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGHVMQVDTLFGKRKM
LTVKLSDGNGTITLRFFNFTAAMKNNFAEGKLVHAYGEIKRGNMGLEIVHPDYKFFAPTQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTDQALALLDKAAVQELLPAGLYDQQLTMGQALHIIHRPSPEINLELFDEGKHPAQVRLIMEELLAQNLSMLAVR
SKGQQDVALPLPPVHQLKQQLLAQLPFSPTNAQARVVQEIEEDMQKAHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFEKMGIPVGWLAGKLKGKAKEAELARIASGEAKMVVGTHALFQEHVVFDHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKREDIVERIRHACL
NEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPDVRIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVP
NASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHAPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRAARYIHHNYPQNAAAIIERWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=768390 QPX65_RS00690 WP_224635196.1 149127..151208(-) (recG) [Vibrio vulnificus strain VV2018]
ATGTCTGCCCAACTGTTATCTGCTGTCCCCCTCACATCCCTCAGTGGGGTCGGTGCTAAGGTGGCTGAAAAGCTGGAGAA
AATTGGCCTAAGCAGCGTGCAAGACCTGCTGTTTCACTTGCCACTTCGTTACGAAGACCGCACCCGCATCTACCCGATTG
CCAAATTGCATGCCGGACTGTGGGCCGCTGTGCAGGGCCATGTGATGCAAGTGGATACCTTGTTTGGTAAACGCAAGATG
TTGACGGTGAAGCTCAGCGACGGGAATGGCACCATCACGTTGCGTTTTTTCAACTTTACCGCGGCAATGAAAAACAATTT
TGCTGAAGGTAAGTTAGTACACGCTTACGGCGAAATTAAGCGCGGTAATATGGGGCTGGAGATCGTTCACCCAGACTACA
AGTTTTTCGCCCCAACGCAGAAGCCCGATGTGGAGCAGAGCTTAACACCTGTTTATCCTACCACCGATGGCTTAAGGCAA
ATCACGCTGCGTAACCTCACAGACCAAGCCCTCGCCCTGCTCGATAAAGCAGCGGTTCAAGAGTTACTGCCTGCCGGGTT
GTATGACCAACAACTGACTATGGGGCAAGCGCTGCACATTATCCATCGTCCTTCGCCGGAGATTAATCTGGAACTGTTCG
ACGAAGGGAAGCACCCTGCCCAAGTTCGCTTAATTATGGAAGAGTTGCTGGCTCAGAACTTATCCATGCTCGCCGTGCGC
AGCAAAGGTCAGCAAGATGTCGCGCTGCCACTTCCCCCCGTCCACCAGCTTAAACAACAGCTGTTAGCCCAACTGCCTTT
TTCACCGACCAATGCCCAAGCGCGAGTGGTACAAGAAATTGAAGAAGACATGCAAAAAGCGCATCCGATGATGCGTTTGG
TGCAAGGGGATGTCGGTTCTGGCAAAACCTTAGTGGCAGCCTTGGCCGCGGTACGCGCTATCGAACATGGCTACCAAGTG
GCGCTGATGGCGCCCACCGAACTGTTGGCCGAGCAGCACGCGATCAACTTCGCCAATTGGTTTGAAAAAATGGGCATTCC
CGTTGGCTGGCTCGCAGGCAAGCTCAAAGGCAAAGCCAAAGAAGCCGAATTAGCCCGCATTGCCAGTGGCGAAGCCAAAA
TGGTGGTCGGGACACATGCGCTGTTCCAAGAACACGTGGTGTTTGACCATCTTGCTCTTGTGATCATTGATGAACAGCAC
CGCTTTGGCGTACATCAACGCTTGGAACTGCGCGAAAAAGGCGCCAAACAAGGCGCTTACCCACATCAACTGATCATGAC
TGCCACTCCGATCCCTCGCACATTGGCCATGACCGCTTATGCCGATTTGGAAACATCGGTGATCGACGAGTTACCGCCCG
GGCGCACCCCAATCCAAACCGTCGCGATTCCCGATACCAAACGCGAGGACATTGTCGAACGCATTCGTCATGCCTGCCTC
AATGAGGGTAAGCAGGCGTATTGGGTCTGTACCCTGATTGATGAATCGGAAGTATTGGAAGCCCAAGCGGCAGCGGAAAC
CGCCGAAGAGCTGCAACGTAAATTGCCTGATGTTCGCATTGGTTTGGTGCATGGGAGAATGAAACCGGCTGAAAAACAAG
CGGTGATGCAAGCATTCAAAAACAATGAATTGCATCTTTTGGTGGCCACCACAGTGATCGAAGTCGGGGTCGATGTGCCC
AACGCCAGCTTGATGATCATCGAAAACCCCGAGCGCTTGGGTCTCGCACAATTGCACCAGTTGCGCGGTCGCGTGGGTCG
GGGCTCAGTAGCAAGCCACTGCGTATTGCTCTATCACGCTCCGCTGTCCAAAACGGCGCAAAAGCGCCTCTCGGTGCTGC
GCGAAAGTAACGATGGTTTCGTCATTGCTCAGCGCGATCTTGAGATCCGCGGGCCAGGTGAGCTGCTCGGCACCAAACAA
ACTGGCCTAGCGGATTTCAAAATTGCCGATCTCGTCCGCGATCAGCGTCTTATCCCCGAAGTTCAGCGCGCTGCACGCTA
CATTCACCACAATTACCCACAAAATGCCGCCGCGATTATTGAACGCTGGTTGGGCGAGCGTGATATTTATTCTAAGGCGT
GA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(271-433)

RecG wedge domain (RecG_wedge)

(15-172)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.405

96.97

0.479
  recG/mmsA Streptococcus pneumoniae R6

40.238

96.825

0.39
  recG/mmsA Streptococcus pneumoniae R36A

40.238

96.825

0.39
  recG Bacillus subtilis subsp. subtilis str. 168

38.714

96.537

0.374