Detailed information NTG0768342

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: QPX68_RS12950
• Genome accession: NZ_CP126696
• Coordinates: 2667950..2669212 (-)
• Length: 420 a.a.
• NCBI ID: WP_007408149.1
• Uniprot ID: A7Z7B2
• Organism: Bacillus amyloliquefaciens strain GZY63
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2662950..2674212

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QPX68_RS12935	yihA	2663035..2663622 (-)	588	WP_007612895.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
QPX68_RS12940	lon	2663619..2665943 (-)	2325	WP_007612896.1	endopeptidase La	-
QPX68_RS12945	lonB	2666142..2667800 (-)	1659	WP_007612897.1	ATP-dependent protease LonB	-
QPX68_RS12950	clpX	2667950..2669212 (-)	1263	WP_007408149.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
QPX68_RS12955	tig	2669484..2670758 (-)	1275	WP_003152618.1	trigger factor	-
QPX68_RS12960	ddcA	2670975..2671979 (-)	1005	WP_025285063.1	DNA damage checkpoint antagonist DdcA	-
QPX68_RS12965	leuD	2672097..2672696 (-)	600	WP_032873792.1	3-isopropylmalate dehydratase small subunit	-
QPX68_RS12970	leuC	2672712..2674130 (-)	1419	WP_007612904.1	3-isopropylmalate dehydratase large subunit	-

Sequence

Protein

• Length: 420 a.a.
• Molecular weight: 46247.01 Da
• Isoelectric Point: 4.4911

>NTDB_id=768342 QPX68_RS12950 WP_007408149.1 2667950..2669212(-) (clpX) [Bacillus amyloliquefaciens strain GZY63]
MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEIREILNEYVIGQDQ
AKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILL
KLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI
LFICGGAFDGIEQIIKRRLGQKVIGFGSDNKAADLEKEELLSKVLPEDLLRFGLIPEFIGRLPVIASLEQLDETALVEIL
TKPKNALVKQYKKMLELDDVELEFEDEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADG
EAPRLVLKDGTVVGQDKTSA

Nucleotide

• Length: 1263 bp

>NTDB_id=768342 QPX68_RS12950 WP_007408149.1 2667950..2669212(-) (clpX) [Bacillus amyloliquefaciens strain GZY63]
ATGTTTAAATTCAACGAGGAAAAAGGACAATTGAAATGCTCGTTCTGCGGAAAAACGCAAGATCAGGTTCGTAAGCTGGT
TGCAGGACCGGGTGTATATATATGCGACGAATGTATTGAGCTCTGTACAGAAATCGTAGAGGAAGAGCTTGGTACGGAAG
AAGAAGTCGAATTTAAAGACGTTCCGAAGCCGCAGGAAATCCGTGAGATTCTGAATGAATATGTCATCGGACAGGATCAG
GCGAAGAAATCACTTGCGGTTGCGGTATACAACCATTACAAACGCATCAATTCCAACAGTAAAGTGGATGATGTCGAGCT
TTCTAAAAGTAATATTTCTTTAATCGGACCGACTGGAAGCGGGAAAACACTTCTTGCCCAGACGCTTGCGCGTATTCTGA
ACGTGCCGTTTGCGATCGCGGACGCTACATCTCTGACTGAAGCCGGATATGTCGGTGAGGACGTAGAAAACATCCTCCTC
AAGCTGATTCAGGCAGCAGACTATGATGTGGAAAAAGCAGAAAAAGGCATTATTTATATCGATGAAATCGATAAAGTAGC
GCGAAAATCTGAAAACCCGTCCATTACACGCGACGTATCAGGCGAAGGCGTTCAGCAGGCGCTGCTGAAAATTCTTGAAG
GAACGGTTGCAAGCGTGCCGCCTCAAGGAGGACGCAAACATCCACATCAGGAATTCATCCAGATCGATACGACGAATATT
CTGTTCATTTGCGGCGGTGCATTTGACGGCATTGAACAAATTATCAAACGCCGTCTCGGACAAAAAGTCATCGGTTTCGG
CTCAGATAATAAAGCGGCAGACCTGGAAAAAGAAGAACTGCTTTCTAAAGTTCTTCCGGAAGACTTGCTCCGTTTCGGTC
TGATTCCTGAATTCATCGGCCGTCTTCCTGTCATTGCAAGCCTTGAGCAGCTTGACGAAACGGCACTGGTTGAAATTCTG
ACTAAACCGAAAAACGCACTCGTCAAACAATACAAGAAAATGTTAGAACTTGATGATGTCGAGCTTGAATTTGAAGACGA
GGCATTATCTGAAATTGCGAAAAAAGCGATCGAGCGTAAAACAGGCGCACGCGGCCTGCGTTCTATCATTGAAGGCATCA
TGCTTGACGTGATGTTTGATCTGCCGTCCCGCGATGATATTGAAAAATGTGTCATTACCGGAGCGACAGTCGCAGACGGT
GAAGCACCGCGTCTTGTATTAAAAGACGGCACAGTTGTCGGCCAAGATAAAACATCAGCATAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (109-305)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (311-389)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

3D structure

• AlphaFold DB: A7Z7B2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	68.262	94.524	0.645
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.158	96.19	0.569