Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   LLE01_RS08145 Genome accession   NZ_CP126675
Coordinates   1400018..1401013 (+) Length   331 a.a.
NCBI ID   WP_375153009.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain E.0.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1395018..1406013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE01_RS08125 (LLE01_08100) rpsA 1395977..1397203 (+) 1227 WP_003132594.1 30S ribosomal protein S1 -
  LLE01_RS08130 (LLE01_08105) - 1397354..1398070 (+) 717 WP_003132595.1 nucleoside phosphorylase -
  LLE01_RS08135 (LLE01_08110) pnuC 1398199..1398912 (+) 714 WP_003132596.1 nicotinamide riboside transporter PnuC -
  LLE01_RS08140 uvrC 1399007..1399969 (+) 963 Protein_1393 excinuclease ABC subunit UvrC -
  LLE01_RS08145 uvrC 1400018..1401013 (+) 996 WP_375153009.1 hypothetical protein Machinery gene
  LLE01_RS08150 (LLE01_08120) mutY 1401177..1402340 (+) 1164 WP_003132598.1 A/G-specific adenine glycosylase -
  LLE01_RS08155 (LLE01_08125) pepV 1402406..1403824 (+) 1419 WP_003132599.1 dipeptidase PepV -
  LLE01_RS08160 (LLE01_08130) acpS 1403927..1404286 (+) 360 WP_003132600.1 holo-ACP synthase -
  LLE01_RS08165 (LLE01_08135) alr 1404331..1405434 (+) 1104 WP_003132601.1 alanine racemase -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 37059.80 Da        Isoelectric Point: 10.1078

>NTDB_id=768089 LLE01_RS08145 WP_375153009.1 1400018..1401013(+) (uvrC) [Lactococcus lactis subsp. lactis strain E.0.1]
MDAKVFTAKTLKFSDQKDVEQSIVKLDKELSAEKRLSSLLAKTQIVQPSRGEKKQLVNMATKNAQSQLQLKFDVAERDIL
KTTKAVENLGKILGIPKPVRIESFDNSNIMGTSPVSAMVVFIDGKPSKKDYRKYKIKTVVGADDYASMREVMTRRYSRAL
KEETALPDLIAMDGGAGQVNITKQVLKELGLSIPVAGMQKNDKHQTSELLFGDPLDVVPLSRQSQEFFLLTRIQDEVHRF
AITFHRQLRGKNTFSSKLDGIVGLGPKRKQKLLTTFKNLKAIEEASVQEVAEADIPYEVAERVKTTLSGPIQENENWESL
KDNVPLLEGKK

Nucleotide


Download         Length: 996 bp        

>NTDB_id=768089 LLE01_RS08145 WP_375153009.1 1400018..1401013(+) (uvrC) [Lactococcus lactis subsp. lactis strain E.0.1]
GTGGATGCAAAAGTTTTTACGGCCAAGACGCTTAAATTTTCTGATCAAAAAGATGTTGAGCAATCAATTGTTAAACTTGA
TAAAGAATTATCAGCCGAAAAACGTTTATCATCACTTTTAGCTAAAACACAGATTGTTCAACCAAGCCGTGGTGAGAAAA
AACAATTGGTTAATATGGCAACTAAGAATGCTCAAAGTCAATTACAATTGAAATTTGATGTGGCTGAGCGTGATATTTTG
AAAACGACTAAAGCGGTTGAAAACTTGGGTAAAATTTTGGGAATACCAAAACCTGTAAGAATTGAATCTTTTGATAATTC
AAATATTATGGGGACTTCACCAGTATCTGCAATGGTTGTTTTTATTGATGGAAAACCTTCAAAAAAAGATTATCGGAAAT
ATAAAATTAAAACAGTGGTTGGTGCGGATGACTATGCTTCAATGCGCGAGGTGATGACGAGACGTTATTCGCGAGCTTTA
AAAGAAGAAACGGCTCTTCCTGATTTGATTGCAATGGATGGTGGAGCTGGTCAAGTTAACATTACCAAGCAAGTTTTAAA
AGAGCTTGGGCTATCGATTCCGGTTGCTGGGATGCAAAAAAATGATAAGCACCAAACGTCAGAATTACTTTTTGGTGATC
CTTTAGACGTGGTTCCCTTGTCAAGACAATCTCAAGAATTCTTTTTGCTGACCAGAATTCAAGATGAGGTTCACCGTTTT
GCGATTACATTCCATAGACAACTACGTGGTAAAAATACATTTTCAAGTAAATTGGACGGTATTGTTGGACTTGGTCCAAA
ACGAAAACAAAAGTTACTGACAACTTTCAAAAATTTGAAAGCAATTGAAGAGGCAAGTGTACAAGAAGTGGCAGAAGCTG
ACATTCCTTATGAAGTAGCAGAACGTGTGAAAACAACTTTGTCTGGACCAATTCAAGAAAATGAAAATTGGGAATCACTC
AAGGATAATGTTCCTCTTTTAGAAGGTAAAAAATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(92-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

70

81.571

0.571
  uvrC Streptococcus pneumoniae D39

70

81.571

0.571
  uvrC Streptococcus pneumoniae TIGR4

70

81.571

0.571