Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LLE01_RS03245 Genome accession   NZ_CP126675
Coordinates   444580..445392 (-) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis subsp. lactis strain E.0.1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 439580..450392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE01_RS03220 (LLE01_03205) ytpR 439806..440432 (+) 627 WP_003131594.1 YtpR family tRNA-binding protein -
  LLE01_RS03225 (LLE01_03210) nox 440595..441935 (+) 1341 WP_021214845.1 H2O-forming NADH oxidase -
  LLE01_RS03230 (LLE01_03215) - 442025..442414 (+) 390 WP_010905314.1 single-stranded DNA-binding protein -
  LLE01_RS03235 (LLE01_03220) groES 442534..442818 (+) 285 WP_003131589.1 co-chaperone GroES -
  LLE01_RS03240 (LLE01_03225) groL 442906..444534 (+) 1629 WP_003131585.1 chaperonin GroEL -
  LLE01_RS03245 (LLE01_03230) vicX 444580..445392 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  LLE01_RS03250 (LLE01_03235) vicK 445563..447005 (-) 1443 WP_010905315.1 cell wall metabolism sensor histidine kinase WalK Regulator
  LLE01_RS03255 (LLE01_03240) yycF 446998..447699 (-) 702 WP_003131580.1 response regulator YycF -
  LLE01_RS03260 (LLE01_03245) tmk 447877..448512 (+) 636 WP_003131575.1 dTMP kinase -
  LLE01_RS03265 (LLE01_03250) - 448645..449505 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  LLE01_RS03270 (LLE01_03255) yaaT 449557..450339 (+) 783 WP_010905316.1 stage 0 sporulation family protein Regulator

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=768055 LLE01_RS03245 WP_003131583.1 444580..445392(-) (vicX) [Lactococcus lactis subsp. lactis strain E.0.1]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=768055 LLE01_RS03245 WP_003131583.1 444580..445392(-) (vicX) [Lactococcus lactis subsp. lactis strain E.0.1]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCTTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685