Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   OZ430_RS03310 Genome accession   NZ_CP115039
Coordinates   732657..734249 (-) Length   530 a.a.
NCBI ID   WP_041015969.1    Uniprot ID   -
Organism   Stutzerimonas kunmingensis strain LP1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 727657..739249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ430_RS03295 (OZ430_03295) - 728248..729843 (-) 1596 WP_312914663.1 PleD family two-component system response regulator -
  OZ430_RS03300 (OZ430_03300) - 730059..731117 (+) 1059 WP_312914661.1 DUF2333 family protein -
  OZ430_RS03305 (OZ430_03305) pilR 731195..732532 (-) 1338 WP_023447174.1 sigma-54 dependent transcriptional regulator Regulator
  OZ430_RS03310 (OZ430_03310) pilS 732657..734249 (-) 1593 WP_041015969.1 PAS domain-containing sensor histidine kinase Regulator
  OZ430_RS03315 (OZ430_03315) - 734239..734472 (-) 234 WP_014819063.1 PP0621 family protein -
  OZ430_RS03320 (OZ430_03320) - 734589..735578 (-) 990 WP_014819064.1 outer membrane protein assembly factor BamD -
  OZ430_RS03325 (OZ430_03325) rluD 735784..736758 (+) 975 WP_044315721.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OZ430_RS03330 (OZ430_03330) pgeF 736755..737489 (+) 735 WP_312914659.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58861.94 Da        Isoelectric Point: 7.8132

>NTDB_id=767996 OZ430_RS03310 WP_041015969.1 732657..734249(-) (pilS) [Stutzerimonas kunmingensis strain LP1]
MGTENLTFFGDQGRRILRLYHLYRLTIGLALVLLISADLHNDLLEMSNPQLFQYGAWIYLILNIIVAVLVQNPERDLPVL
GLALMDVILLSGLFYFGGGTPSGIGNLLIVAVAIANILLRGRVGFFIAAVAATGLIYLTFYLSIQRPEASSQYVQASALG
TLCFAAAFLVQGLARRLQVSETLARQRAEEVANLEALNALILQRMRTGIMVLDPQERVLLANQGALQLLGQDSLAGERLA
PRCPELLKALQQWRGNPTLRPPNLRATPGGPTLQPSFAALQHGNKLDTLVFLEDISQIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRQGLGPQ
QTLHLDTVGSSLQTRMDPNQLTQVLTNLVQNGLRYSGQQNPRAQVWLRLFRDEASDLPIVEVLDDGPGIAAEQLQNIFEP
FFTTESKGTGLGLYISRELCESNQARLDYRERPEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=767996 OZ430_RS03310 WP_041015969.1 732657..734249(-) (pilS) [Stutzerimonas kunmingensis strain LP1]
GTGGGCACTGAAAACCTCACCTTCTTTGGCGATCAGGGACGGCGGATTCTCCGCCTGTACCACCTCTATCGGCTGACTAT
CGGCCTGGCGCTGGTTCTGCTGATCAGCGCCGACCTGCACAACGACCTGCTGGAGATGAGCAACCCGCAGCTCTTTCAGT
ACGGCGCCTGGATCTACCTGATCCTCAACATCATCGTTGCCGTGCTGGTGCAGAACCCGGAGCGCGATCTGCCCGTGCTC
GGGCTGGCGCTGATGGACGTCATCCTGCTGTCCGGGCTGTTCTACTTCGGCGGTGGCACCCCGAGCGGTATCGGCAACCT
GCTGATAGTCGCCGTTGCCATCGCCAACATACTGCTGCGTGGCAGGGTCGGTTTCTTCATCGCCGCGGTTGCTGCGACGG
GCCTGATCTACCTGACCTTCTACCTCAGCATTCAACGCCCCGAAGCCAGCAGCCAGTACGTTCAGGCCAGCGCACTCGGC
ACGCTCTGCTTTGCTGCCGCCTTCCTGGTTCAGGGGCTGGCTCGCCGCCTGCAGGTCAGCGAGACGCTGGCGCGCCAGCG
TGCGGAAGAGGTGGCGAACCTGGAGGCGCTCAACGCGCTGATCCTCCAGCGCATGCGTACCGGCATCATGGTACTGGACC
CGCAGGAGCGCGTTCTGCTCGCCAATCAGGGGGCTCTGCAACTGCTCGGCCAGGACTCGCTGGCAGGCGAACGCCTCGCA
CCGCGCTGCCCGGAATTGCTCAAGGCACTGCAACAGTGGCGAGGCAATCCGACCCTGCGCCCGCCGAACCTCAGGGCAAC
GCCTGGCGGCCCAACGCTGCAGCCGAGCTTCGCCGCACTACAGCACGGGAACAAGCTCGACACACTGGTGTTTCTCGAAG
ACATCTCGCAGATCGCACAGAAGGCACAACAGCTCAAGCTCGCCTCCCTCGGCCGCCTCACAGCCAGCATCGCCCATGAA
ATCCGCAATCCGCTGGGCGCCATCAGCCACGCCGCGCAGCTACTGCAGGAATCCGAAGAACTGGACGGACCTGACCGCCG
TCTGGCACAGATCATTCAGGATCATTCACGGCGGATGAACCTGGTGATAGAGAACGTCCTCCAGCTTTCCCGGCGGCGCC
AGGCCGAACCCCAGCTGCTGGACCTGAAGTACTGGCTGCATCGTTTCGCCAGCGAGTTCCGCCAGGGACTCGGCCCGCAG
CAGACCCTGCATCTGGATACCGTGGGCAGCTCGCTGCAGACCCGCATGGACCCCAATCAGCTGACCCAGGTGCTGACCAA
CCTGGTCCAGAACGGGCTGCGCTACAGCGGCCAGCAGAATCCGCGGGCGCAGGTCTGGCTCCGCCTGTTCCGTGACGAAG
CCAGCGACCTGCCTATCGTCGAAGTGCTCGATGACGGCCCTGGTATCGCGGCCGAGCAACTTCAGAACATCTTCGAACCG
TTCTTCACCACCGAAAGCAAAGGCACCGGGCTGGGGCTATATATCTCCCGCGAGCTATGCGAAAGCAACCAGGCACGCCT
GGACTACCGCGAGCGCCCCGAGGGCGGCAGCTGCTTCCGCATCGTCTTCGCCCACCCCCGCAAGCTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

PAS domain (PAS_8)

(202-240)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.226

100

0.662