Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   F0318_RS01240 Genome accession   NZ_CP126598
Coordinates   265693..266457 (-) Length   254 a.a.
NCBI ID   WP_053273411.1    Uniprot ID   -
Organism   Escherichia coli strain Ec1120     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 260693..271457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0318_RS01230 (F0318_0001225) nikR 264483..264884 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  F0318_RS01235 (F0318_0001230) nikE 264890..265696 (-) 807 WP_053273410.1 nickel import ATP-binding protein NikE -
  F0318_RS01240 (F0318_0001235) amiE 265693..266457 (-) 765 WP_053273411.1 nickel import ATP-binding protein NikD Regulator
  F0318_RS01245 (F0318_0001240) nikC 266457..267290 (-) 834 WP_001008803.1 nickel ABC transporter permease subunit NikC -
  F0318_RS01250 (F0318_0001245) nikB 267287..268231 (-) 945 WP_097342414.1 nickel ABC transporter permease subunit NikB -
  F0318_RS01255 (F0318_0001250) nikA 268231..269805 (-) 1575 WP_053273412.1 nickel ABC transporter substrate-binding protein -
  F0318_RS01260 (F0318_0001255) acpT 269916..270503 (-) 588 WP_072646923.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26824.41 Da        Isoelectric Point: 6.4859

>NTDB_id=767557 F0318_RS01240 WP_053273411.1 265693..266457(-) (amiE) [Escherichia coli strain Ec1120]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMQTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=767557 F0318_RS01240 WP_053273411.1 265693..266457(-) (amiE) [Escherichia coli strain Ec1120]
ATGCCGCAACAGATTGAACTGCGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCACTGACCTGCGCCGCGACGCTGGGCATTCTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCAGACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398