Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O6106_RS17065 Genome accession   NZ_CP114895
Coordinates   3464671..3465732 (-) Length   353 a.a.
NCBI ID   WP_000963138.1    Uniprot ID   -
Organism   Escherichia coli strain CM56     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3459671..3470732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6106_RS17050 csrA 3460924..3461109 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  O6106_RS17055 alaS 3461344..3463974 (-) 2631 WP_000047184.1 alanine--tRNA ligase -
  O6106_RS17060 recX 3464102..3464602 (-) 501 WP_000140508.1 recombination regulator RecX -
  O6106_RS17065 recA 3464671..3465732 (-) 1062 WP_000963138.1 recombinase RecA Machinery gene
  O6106_RS17070 pncC 3465812..3466309 (-) 498 WP_000132231.1 nicotinamide-nucleotide amidase -
  O6106_RS17075 mltB 3466454..3467539 (-) 1086 WP_001295177.1 lytic murein transglycosylase B -
  O6106_RS17080 srlA 3467795..3468358 (+) 564 WP_000573321.1 PTS glucitol/sorbitol transporter subunit IIC -
  O6106_RS17085 srlE 3468355..3469314 (+) 960 WP_000148878.1 PTS glucitol/sorbitol transporter subunit IIB -
  O6106_RS17090 srlB 3469325..3469696 (+) 372 WP_000216194.1 PTS glucitol/sorbitol transporter subunit IIA -
  O6106_RS17095 srlD 3469700..3470479 (+) 780 WP_001077358.1 sorbitol-6-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38031.41 Da        Isoelectric Point: 4.7573

>NTDB_id=767525 O6106_RS17065 WP_000963138.1 3464671..3465732(-) (recA) [Escherichia coli strain CM56]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
DDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=767525 O6106_RS17065 WP_000963138.1 3464671..3465732(-) (recA) [Escherichia coli strain CM56]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGACAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CGCGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GACGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCGACTGCCTGGCTGAAAGATAACCCGGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGC
AGAAACTAACGAAGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.988

93.768

0.788
  recA Vibrio cholerae strain A1552

83.988

93.768

0.788
  recA Pseudomonas stutzeri DSM 10701

73.887

95.467

0.705
  recA Acinetobacter baumannii D1279779

73.78

92.918

0.686
  recA Acinetobacter baylyi ADP1

73.476

92.918

0.683
  recA Glaesserella parasuis strain SC1401

69.164

98.3

0.68
  recA Neisseria gonorrhoeae MS11

68.712

92.351

0.635
  recA Neisseria gonorrhoeae MS11

68.712

92.351

0.635
  recA Neisseria gonorrhoeae strain FA1090

68.712

92.351

0.635
  recA Ralstonia pseudosolanacearum GMI1000

69.841

89.235

0.623
  recA Streptococcus mitis SK321

60

99.15

0.595
  recA Streptococcus mitis NCTC 12261

60

99.15

0.595
  recA Helicobacter pylori strain NCTC11637

61.424

95.467

0.586
  recA Helicobacter pylori 26695

61.128

95.467

0.584
  recA Streptococcus pneumoniae R6

63.158

91.501

0.578
  recA Streptococcus pneumoniae Rx1

63.158

91.501

0.578
  recA Streptococcus pneumoniae D39

63.158

91.501

0.578
  recA Streptococcus pneumoniae TIGR4

63.158

91.501

0.578
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.346

91.785

0.572
  recA Streptococcus mutans UA159

61.846

92.068

0.569
  recA Streptococcus pyogenes NZ131

61.846

92.068

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.36

94.334

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

92.068

0.564
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

90.935

0.564
  recA Lactococcus lactis subsp. cremoris KW2

61.3

91.501

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

90.935

0.552