Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   QPK28_RS17490 Genome accession   NZ_CP126576
Coordinates   3303562..3304443 (-) Length   293 a.a.
NCBI ID   WP_003184856.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CQMB003     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3298562..3309443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS17455 - 3298772..3299248 (+) 477 WP_003184840.1 Na+/H+ antiporter subunit E -
  QPK28_RS17460 - 3299248..3299532 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  QPK28_RS17465 mnhG 3299516..3299890 (+) 375 WP_003184844.1 monovalent cation/H(+) antiporter subunit G -
  QPK28_RS17470 - 3299930..3300319 (-) 390 WP_003184847.1 hotdog fold thioesterase -
  QPK28_RS17475 - 3300336..3300973 (-) 638 Protein_3390 response regulator transcription factor -
  QPK28_RS17480 comP 3301060..3303366 (-) 2307 WP_119498753.1 ATP-binding protein Regulator
  QPK28_RS17485 comX 3303389..3303553 (-) 165 WP_003184853.1 competence pheromone ComX -
  QPK28_RS17490 comQ 3303562..3304443 (-) 882 WP_003184856.1 polyprenyl synthetase family protein Regulator
  QPK28_RS17495 degQ 3304632..3304772 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  QPK28_RS17500 - 3305258..3305605 (+) 348 WP_009329512.1 hypothetical protein -
  QPK28_RS17505 - 3305648..3306868 (-) 1221 WP_003184864.1 HDOD domain-containing protein -
  QPK28_RS17510 - 3307047..3308516 (-) 1470 WP_003184866.1 nicotinate phosphoribosyltransferase -
  QPK28_RS17515 - 3308534..3309085 (-) 552 WP_003184868.1 isochorismatase family cysteine hydrolase -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33459.20 Da        Isoelectric Point: 4.6798

>NTDB_id=767524 QPK28_RS17490 WP_003184856.1 3303562..3304443(-) (comQ) [Bacillus licheniformis strain CQMB003]
MNHFIDLEIPNADLNRTLHAFLDAKDQLHFSELAFYHYQSFGGTDTDAAETLGAGIELLILAFDIFDDLEDEDSPDEPWM
KINRSVAMNAATALYTISIKVIGSVSNDSCFFNKMMEYILQSSQGQHDDLSDKPVTENECLDMIKRKSGSLTALSCVLGT
MLATGKFNPTVESYALQLGIALQIENDYRGLFYNSKSDIVKNKRTLAYLYLKRKFNQSSIDLLKVFENEDKIADIEIKCY
KEKLKEAGVPQYMYVMIQLAIQKFRRGIAELELKQEEKKWLASFLLNKFDKED

Nucleotide


Download         Length: 882 bp        

>NTDB_id=767524 QPK28_RS17490 WP_003184856.1 3303562..3304443(-) (comQ) [Bacillus licheniformis strain CQMB003]
ATGAATCATTTTATAGACCTTGAGATTCCCAATGCGGACTTAAATCGGACGCTGCACGCTTTTCTAGATGCAAAGGACCA
GTTGCATTTCAGCGAGCTTGCTTTTTATCATTACCAAAGTTTCGGCGGCACGGACACCGATGCGGCAGAAACCCTTGGAG
CAGGCATTGAACTCTTGATTCTTGCGTTTGATATATTCGATGATTTAGAGGATGAAGACAGCCCCGATGAACCTTGGATG
AAAATCAACCGTTCAGTCGCAATGAATGCGGCGACTGCGCTTTATACAATAAGCATTAAAGTGATCGGTTCGGTGTCGAA
CGATTCTTGCTTTTTTAATAAAATGATGGAATACATATTGCAATCTTCACAAGGGCAACATGATGATCTTAGTGATAAGC
CGGTTACGGAAAACGAATGCCTTGATATGATCAAGCGCAAATCTGGTTCATTGACAGCTCTTTCATGTGTTTTGGGAACC
ATGCTCGCTACAGGTAAATTTAATCCTACTGTTGAATCTTATGCACTCCAATTGGGCATTGCTTTACAGATCGAAAATGA
TTATAGAGGTCTTTTCTATAATTCAAAAAGCGATATTGTGAAAAATAAGCGAACACTTGCTTATTTATACTTGAAAAGAA
AATTTAATCAATCCTCAATTGATTTATTAAAAGTATTTGAAAATGAGGATAAAATTGCCGATATAGAAATAAAATGTTAT
AAAGAAAAATTGAAGGAAGCTGGTGTTCCCCAATATATGTATGTCATGATTCAGCTTGCTATTCAGAAATTTAGAAGAGG
AATAGCTGAGTTAGAGCTGAAACAAGAGGAAAAGAAATGGCTTGCTTCTTTCCTTTTGAACAAGTTTGATAAGGAGGATT
AA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(41-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

44.637

98.635

0.44