Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   QPK28_RS10335 Genome accession   NZ_CP126576
Coordinates   1991171..1991308 (+) Length   45 a.a.
NCBI ID   WP_326342457.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CQMB003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1986171..1996308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS10310 - 1986332..1987708 (+) 1377 WP_009328319.1 DNA sulfur modification protein DndB -
  QPK28_RS10315 - 1987712..1988713 (+) 1002 WP_009328318.1 site-specific integrase -
  QPK28_RS10320 - 1989081..1989335 (+) 255 WP_034291511.1 YopT family protein -
  QPK28_RS10325 - 1989850..1990071 (+) 222 WP_034291509.1 hypothetical protein -
  QPK28_RS10330 - 1990170..1991171 (+) 1002 WP_231128213.1 AAA family ATPase -
  QPK28_RS10335 recD 1991171..1991308 (+) 138 WP_326342457.1 ATP-binding domain-containing protein Machinery gene
  QPK28_RS10340 - 1991357..1991578 (+) 222 WP_009328313.1 hypothetical protein -
  QPK28_RS10345 - 1991604..1992272 (+) 669 WP_009328312.1 SLOG family protein -
  QPK28_RS10350 - 1992292..1992474 (+) 183 WP_009328311.1 hypothetical protein -
  QPK28_RS10355 - 1993006..1993203 (+) 198 WP_073411080.1 hypothetical protein -
  QPK28_RS10360 - 1993412..1993609 (+) 198 WP_231128214.1 hypothetical protein -
  QPK28_RS10365 - 1993729..1993872 (+) 144 WP_155761914.1 hypothetical protein -
  QPK28_RS10370 - 1993974..1994783 (+) 810 WP_009328310.1 hypothetical protein -
  QPK28_RS10375 - 1994819..1995022 (+) 204 WP_073411061.1 hypothetical protein -
  QPK28_RS10380 - 1995087..1995899 (-) 813 WP_073411059.1 hypothetical protein -
  QPK28_RS10385 - 1995993..1996220 (+) 228 WP_073411056.1 hypothetical protein -

Sequence

Protein


Download         Length: 45 a.a.        Molecular weight: 5338.21 Da        Isoelectric Point: 8.0751

>NTDB_id=767478 QPK28_RS10335 WP_326342457.1 1991171..1991308(+) (recD) [Bacillus licheniformis strain CQMB003]
MTCHKSQGSQWEKVVVIDEVLDRNMHHRWLYTAITRSTEKLVLVV

Nucleotide


Download         Length: 138 bp        

>NTDB_id=767478 QPK28_RS10335 WP_326342457.1 1991171..1991308(+) (recD) [Bacillus licheniformis strain CQMB003]
ATCACTTGCCACAAATCACAAGGATCGCAATGGGAAAAGGTTGTAGTCATTGATGAAGTTCTAGATAGGAACATGCACCA
CAGATGGCTCTATACCGCAATAACACGTAGCACAGAAAAGTTAGTGTTGGTTGTGTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(1-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae MS11

42.308

100

0.489
  recD Neisseria gonorrhoeae strain FA1090

42.308

100

0.489
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.86

95.556

0.4